CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.329e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+    +VL  EK+   +L D  S+ K+  LD+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.329e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV++G   +GV+    +VL  EK+   +L D   + KI  LD+H+    AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.571e-14
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRS--VRKIVRLDNHIALACAGL 257
            RYD+  T+FSP+G ++QVEYA+ A+R   A VG+   D IVL  EKK+T KL DS +    K+ ++D H+  A AG+
Sbjct:    4 RYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGI 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D +VL  EKK T K LQ S S  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D +VL  EKK T K LQ S S  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D +VL  EKK T K LQ S S  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.633e-13
Identity = 30/76 (39.47%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDR +  FSP+G +FQ+EYA+EA++ G+ ++G++  D +++  EK+    L D  SV KI+ +D+HI    +G+ A
Sbjct:    8 YDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYALEA++ G   +GV+  + +VL VEK+ T  L +  S++K+V +D H+  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYALEAIKLG---IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD + + FSPDG +FQVEYA++AV   + A+G+R  D +V GVEK    KL +  S +++  +D H+ +A AGL A
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD + + FSPDG +FQVEYA++AV   + A+G+R  D +V GVEK    KL +  S +++  +D H+ +A AGL A
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 83          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSMA_SULTO7.329e-1450.00Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_SULAC7.329e-1448.65Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA4_DICDI9.571e-1446.75Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA4_SPIOL1.250e-1348.68Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA4_PETHY1.250e-1348.68Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA4_ARATH1.250e-1348.68Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA5_TRYBB1.633e-1339.47Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA5_DICDI3.637e-1346.15Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA3_RAT3.637e-1344.74Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE3.637e-1344.74Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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