CF504461

Overview
NameCF504461
Unique NameCF504461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: MALF3_MALFU (Putative peroxiredoxin (Fragment) OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.379e-17
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   72 VGDPLPDGTLAYFDEQDQLQQVSV---------HSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            +G  +P+ T AY     +L+   V         H    GKKV++  VPGAFTPTC+  HVP ++EK  ELKSKGVDE++ IS NDPFV+
Sbjct:    2 IGSTIPNATFAYVPYSPELEDHKVCGMPTSFQSHERWKGKKVVIVAVPGAFTPTCTANHVPPYVEKIQELKSKGVDEVVVISANDPFVL 90          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRDX5_PAPHA (Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.107e-17
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFV 308
            MAPI VGD +P   +  F E +   +V++  L  GKK +LFGVPGAFTP CS  H+PGF+E+A+ LK+KGV  + C+SVND FV
Sbjct:   54 MAPIKVGDAIP--AVEVF-EGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFV 134          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRDX5_CERAE (Peroxiredoxin-5, mitochondrial OS=Cercopithecus aethiops GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.107e-17
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFV 308
            MAPI VGD +P   +  F E +   +V++  L  GKK +LFGVPGAFTP CS  H+PGF+E+A+ LK+KGV  + C+SVND FV
Sbjct:   54 MAPIKVGDAIP--AVEVF-EGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFV 134          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRDX5_MOUSE (Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.921e-17
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAPI VGD +P   +    E +  ++V++  L  GKK +LFGVPGAFTP CS  H+PGF+E+A  LK+KG   + C+SVND FV++
Sbjct:   49 MAPIKVGDAIPSVEVF---EGEPGKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVIE 131          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRDX5_RAT (Peroxiredoxin-5, mitochondrial OS=Rattus norvegicus GN=Prdx5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.859e-16
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFV 308
            MAPI VGD +P   +    E +  ++V++  L   KK +LFGVPGAFTP CS  H+PGF+E+A  LK+KG   + C+SVND FV
Sbjct:   52 MAPIKVGDTIPSVEVF---EGEPGKKVNLAELFKDKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDAFV 132          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.919e-13
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  159 GKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            GKKV++FG+PGA+T  CS  HVP +    D+LK+KGVD ++C+SVNDP+ +
Sbjct:   70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYAL 120          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: Y1621_SYNY3 (Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803) GN=sll1621 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  138 SVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            +   +  GKKV+LF +PGAFTPTCS  H+P + +  +E ++ GVD+I+C+SVND FVM
Sbjct:   32 TTEQIFGGKKVVLFSLPGAFTPTCSSNHLPRYEQLFEEFQALGVDDIICLSVNDAFVM 89          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  159 GKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            GKKV++FG+PGA+T  CS +HVP +    D+ K+KG+D ++C+SVNDPF +
Sbjct:   73 GKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAI 123          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: MALF2_MALFU (Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 3
Query:   69 AVGDPLPDGTLAYFDEQDQLQQVSVHSLAA---------GKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            A G+ +PD  + Y     +L    V  +           GKKV++  +PGA+TP C  +H+P  +++ DELK+KGVD +  I+ NDPFVM
Sbjct:    9 AKGNEIPDTLMGYIPWTPELDSGEVCGIPTTFKTRDEWKGKKVVIVSIPGAYTPICHQQHIPPLVKRVDELKAKGVDAVYVIASNDPFVM 98          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PMPA_CANBO (Putative peroxiredoxin-A OS=Candida boidinii GN=PMPA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.764e-12
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYF--DEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAPI  GD  P     Y+   E  +   + +      KK ++  VPGAFTP C+ +H+PG+I+    + SKGVD +L IS NDPFV+K
Sbjct:    1 MAPIKRGDRFPTTDDVYYIPPEGGEPGPLELSKFVKTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVISQNDPFVLK 88          
The following BLAST results are available for this feature:
BLAST of CF504461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MALF3_MALFU2.379e-1747.19Putative peroxiredoxin (Fragment) OS=Malassezia fu... [more]
PRDX5_PAPHA3.107e-1753.57Peroxiredoxin-5, mitochondrial OS=Papio hamadryas ... [more]
PRDX5_CERAE3.107e-1753.57Peroxiredoxin-5, mitochondrial OS=Cercopithecus ae... [more]
PRDX5_MOUSE6.921e-1750.00Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=... [more]
PRDX5_RAT5.859e-1650.00Peroxiredoxin-5, mitochondrial OS=Rattus norvegicu... [more]
PRX2F_ORYSJ7.919e-1354.90Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su... [more]
Y1621_SYNY31.351e-1251.72Putative peroxiredoxin sll1621 OS=Synechocystis sp... [more]
PRX2F_ARATH1.351e-1252.94Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]
MALF2_MALFU1.351e-1237.78Putative peroxiredoxin OS=Malassezia furfur PE=1 S... [more]
PMPA_CANBO1.764e-1242.05Putative peroxiredoxin-A OS=Candida boidinii GN=PM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-950 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504461 ID=CF504461; Name=CF504461; organism=Citrus sinensis; type=EST; length=315bp
CCCTACGGTGGTAATCGTGTATTTAATCACAGGCGCGGATCAGATTCTAT
CTCTAAATGGCTCCTATCGCAGTCGGTGACCCCTTGCCGGACGGTACTCT
AGCTTACTTCGACGAACAAGATCAGTTGCAGCAAGTGTCCGTACACTCGC
TCGCTGCCGGTAAAAAGGTCATCCTCTTTGGCGTCCCCGGTGCTTTCACT
CCTACTTGCAGCTTGAAGCATGTGCCTGGATTCATCGAGAAGGCTGATGA
GTTGAAGTCAAAAGGCGTCGATGAAATTCTCTGCATAAGCGTTAATGACC
CATTTGTGATGAAGG
back to top