CF504461

Overview
NameCF504461
Unique NameCF504461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PMPB_CANBO (Putative peroxiredoxin-B OS=Candida boidinii GN=PMPB PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.703e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:   57 MAPIAVGDPLPDGTLAYF--DEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVMK 314
            MAPI  GD  P     Y+   E  +     +      KK ++  VPGAFTP C+ +H+PG+I+    + SKGVD +L I+ NDPFV+K
Sbjct:    1 MAPIKRGDRFPTTDDVYYIPPEGGEPGAFELSKFVKTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVITQNDPFVLK 88          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PMP20_EMENI (Putative peroxiredoxin pmp20 OS=Emericella nidulans GN=AN8692 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.703e-12
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 3
Query:  156 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            A KKVILF +PGAFTP CS +HVP +IE+  E+++KGVD +  ++ ND FVM
Sbjct:   44 ADKKVILFALPGAFTPVCSARHVPEYIERLPEIRAKGVDVVAVLAYNDAFVM 95          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PMP20_ASPFU (Putative peroxiredoxin pmp20 OS=Aspergillus fumigatus GN=pmp20 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.703e-12
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 3
Query:  156 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            A KKVILF +PGAFTP CS +HVP +IEK  E+++KGVD +  ++ ND +VM
Sbjct:   44 ADKKVILFALPGAFTPVCSARHVPEYIEKLPEIRAKGVDVVAVLAYNDAYVM 95          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PRX5_HAEIN (Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI0572 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  120 DQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFVM 311
            D+   V+   L   K VI+F +PGAFTPTCS  H+P + E A   K  GVD+IL +SVND FVM
Sbjct:   20 DKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM 83          
BLAST of CF504461 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  162 KKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKGVDEILCISVNDPFV 308
            K V++  +PGAFTPTC+  H+P F+EK   LKS GVD ++ +S NDPFV
Sbjct:   41 KTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFV 89          
The following BLAST results are available for this feature:
BLAST of CF504461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PMPB_CANBO6.703e-1240.91Putative peroxiredoxin-B OS=Candida boidinii GN=PM... [more]
PMP20_EMENI6.703e-1257.69Putative peroxiredoxin pmp20 OS=Emericella nidulan... [more]
PMP20_ASPFU6.703e-1257.69Putative peroxiredoxin pmp20 OS=Aspergillus fumiga... [more]
PRX5_HAEIN4.345e-1151.56Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influen... [more]
PMP20_LIPKO4.345e-1155.10Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-950 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504461 ID=CF504461; Name=CF504461; organism=Citrus sinensis; type=EST; length=315bp
CCCTACGGTGGTAATCGTGTATTTAATCACAGGCGCGGATCAGATTCTAT
CTCTAAATGGCTCCTATCGCAGTCGGTGACCCCTTGCCGGACGGTACTCT
AGCTTACTTCGACGAACAAGATCAGTTGCAGCAAGTGTCCGTACACTCGC
TCGCTGCCGGTAAAAAGGTCATCCTCTTTGGCGTCCCCGGTGCTTTCACT
CCTACTTGCAGCTTGAAGCATGTGCCTGGATTCATCGAGAAGGCTGATGA
GTTGAAGTCAAAAGGCGTCGATGAAATTCTCTGCATAAGCGTTAATGACC
CATTTGTGATGAAGG
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