CF504462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.570e-16 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 50 FVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD 352 FV + PI ++ C N + +++ L+ V K GK+L K VM+TWLPA+ +LE + LPSP +QK R + LYEGP DD+ ANAI+ CD Sbjct: 278 FVVYVLNPIYKVKELCNNGKVEEIKEYLKFYKVDFKGVVLTGSGKSLFKEVMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCD 378
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12 Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355 TK S++ +R FV+F EP+ +I+ + D L L +LG+ + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP Sbjct: 356 TKKAPSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 469
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11 Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355 TK +++ +R FV+F EP+ +I+ + D L L +LG+ + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP Sbjct: 357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 470
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11 Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355 TK +++ +R FV+F EP+ +I+ + D L L +LG+ + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP Sbjct: 357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 470
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11 Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355 TK +++ +R FV+F EP+ +I+ + D L L +LG+ + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP Sbjct: 357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 470
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11 Identity = 33/114 (28.95%), Postives = 60/114 (52.63%), Query Frame = 2 Query: 14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355 TK +++ +R FV+F EP+ +I+ + D L L +LG+ + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ CDP Sbjct: 357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDP 470 The following BLAST results are available for this feature:
BLAST of CF504462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504462 ID=CF504462; Name=CF504462; organism=Citrus sinensis; type=EST; length=357bpback to top |