CF504462

Overview
NameCF504462
Unique NameCF504462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.570e-16
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   50 FVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD 352
            FV +   PI ++   C N + +++   L+   V  K       GK+L K VM+TWLPA+  +LE +   LPSP  +QK R + LYEGP DD+ ANAI+ CD
Sbjct:  278 FVVYVLNPIYKVKELCNNGKVEEIKEYLKFYKVDFKGVVLTGSGKSLFKEVMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCD 378          
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 2
Query:   14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355
            TK   S++ +R FV+F  EP+ +I+   + D    L   L +LG+ +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP
Sbjct:  356 TKKAPSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 469          
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 2
Query:   14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355
            TK   +++ +R FV+F  EP+ +I+   + D    L   L +LG+ +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP
Sbjct:  357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 470          
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 2
Query:   14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355
            TK   +++ +R FV+F  EP+ +I+   + D    L   L +LG+ +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP
Sbjct:  357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 470          
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 2
Query:   14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355
            TK   +++ +R FV+F  EP+ +I+   + D    L   L +LG+ +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP
Sbjct:  357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDP 470          
BLAST of CF504462 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 33/114 (28.95%), Postives = 60/114 (52.63%), Query Frame = 2
Query:   14 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP 355
            TK   +++ +R FV+F  EP+ +I+   + D    L   L +LG+ +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+  CDP
Sbjct:  357 TKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDP 470          
The following BLAST results are available for this feature:
BLAST of CF504462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF2_ENCCU4.570e-1641.58Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
U5S1_MOUSE6.829e-1229.82116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB1.521e-1128.95116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.521e-1128.95116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.521e-1128.95116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.987e-1128.95116 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-951 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504462 ID=CF504462; Name=CF504462; organism=Citrus sinensis; type=EST; length=357bp
AAAGAAGTGGACAACCAAGAACACTGGTAGTGCGACATGCAAGCGTGGTT
TTGTTCAGTTTTGCTATGAACCGATTAAGCAGATTATCAACACTTGCATG
AATGATCAGAAAGATAAGCTGTGGCCCATGTTGCAAAAGCTTGGTGTCAC
GATGAAGTCAGAAGAGAAGGATTTGATGGGCAAGGCATTGATGAAGCGTG
TCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGATC
TTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACTT
GTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGTG
ATCCTAA
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