CF504463

Overview
NameCF504463
Unique NameCF504463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 2.808e-42
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKI PLWRHY+ NT GLIFV DSNDR+
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRE 98          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.105e-41
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDR 333
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+I  LWRHY++NT+G+IFV DSNDR
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 4.055e-41
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDR 333
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+I  LWRHY++NT+G+IFV DSNDR
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 4.957e-39
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSND 330
            MG   +K+F +LF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD I PLWRHY+QNT  LI+V DS D
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSAD 96          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.552e-37
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKI PLWRHY+  TQGLIFV D  DRD
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRD 94          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 3.552e-37
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKI PLWRHY+  TQGLIFV D  DRD
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.914e-37
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKI PLWRHY+  TQGLIFV D  DRD
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.914e-37
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKI PLWRHY+  TQGLIFV D  DRD
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.914e-37
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKI PLWRHY+  TQGLIFV D  DRD
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94          
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.914e-37
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKI PLWRHY+  TQGLIFV D  DRD
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94          
The following BLAST results are available for this feature:
BLAST of CF504463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
ARF1_PLAFA2.808e-4281.63ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST3.105e-4180.41ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST4.055e-4180.41ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_GIALA4.957e-3978.13ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_XENLA3.552e-3778.26ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_DROME3.552e-3778.26ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT7.914e-3777.17ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG7.914e-3777.17ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE7.914e-3777.17ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN7.914e-3777.17ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-952 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504463 ID=CF504463; Name=CF504463; organism=Citrus sinensis; type=EST; length=336bp
CTTAAGCAGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCCTCCTTTGTGGAGACATTACTTTCAAAACACTCAA
GGACTTATCTTTGTGGGTGATAGCAATGATCGTGAC
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