CF504464

Overview
NameCF504464
Unique NameCF504464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 2.418e-13
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 3 
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            H  WV C +FSP+     IVSAS D+TVK+W+ S+ +   +   H G+V  V   P G+  A+ G D  + +WD+
Sbjct:  144 HINWVRCAKFSPDGR--LIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDV 216

HSP 2 Score: 35.4242 bits (80), Expect = 2.418e-13
Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 1 
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARR 105
            HT  V SV F  D +  V+AS D+T+K+W T R+
Sbjct:  102 HTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQ 135

HSP 3 Score: 48.1358 bits (113), Expect = 5.826e-11
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 3 
Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            +Q    H+  V+ + F P+     +++AS D T+K+ +L   +L  TL GH G   TVA S  G   ASGG D  +++W
Sbjct:  222 LQHYQLHSAAVNGLSFHPSGNY--LITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298

HSP 4 Score: 38.1206 bits (87), Expect = 5.826e-11
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 1 
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRF 123
            H   V    FS D R IVSAS D+T+KLW+ + R  VH +
Sbjct:  144 HINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSY 183
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.418e-13
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 3 
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            H  WV C +FSP+     IVSAS D+TVK+W+ ++ +   +   H G+V  V   P G+  A+ G D  + +WD+
Sbjct:  144 HINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDV 216

HSP 2 Score: 36.5798 bits (83), Expect = 2.418e-13
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARR 105
            HT  V SV F  D +  V+AS D+T+K+W+T R+
Sbjct:  102 HTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQ 135

HSP 3 Score: 49.6766 bits (117), Expect = 2.664e-11
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 3 
Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            +Q    H+  V+ + F P+     +V+AS D T+K+ +L   +L  TL GH G   TVA S  G   ASGG D  +++W
Sbjct:  222 LQHYQLHSAAVNALSFHPSGNY--LVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298

HSP 4 Score: 37.7354 bits (86), Expect = 2.664e-11
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = 1 
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRF 123
            H   V    FS D R IVSAS D+T+KLW+   R  VH +
Sbjct:  144 HINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSY 183
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.113e-13
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK----LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 371
            D +V    A     ++  + H + V  V FSP+    ++ S S D+++K+W+LS  +     RAT  GH  +V +VA SPDGS   SG KD  +  WD   G
Sbjct:  436 DNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDG--KSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNG 535

HSP 2 Score: 33.113 bits (74), Expect = 3.113e-13
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GH  D+ S+ +S D R IVS S D+  K+W+
Sbjct:  367 GHELDIYSLDYSSDGRFIVSGSGDKKAKIWD 397
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.156e-13
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            D+ ++    S+   ++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+ L
Sbjct:  108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

HSP 2 Score: 33.8834 bits (76), Expect = 3.156e-13
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GHTK V SV FS +   + S+S D+ IK+W
Sbjct:   43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.156e-13
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            D+ ++    S+   ++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+ L
Sbjct:  108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

HSP 2 Score: 33.8834 bits (76), Expect = 3.156e-13
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GHTK V SV FS +   + S+S D+ IK+W
Sbjct:   43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.156e-13
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            D+ ++    S+   ++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+ L
Sbjct:  108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

HSP 2 Score: 33.8834 bits (76), Expect = 3.156e-13
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GHTK V SV FS +   + S+S D+ IK+W
Sbjct:   43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.156e-13
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            D+ ++    S+   ++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+ L
Sbjct:  108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

HSP 2 Score: 33.8834 bits (76), Expect = 3.156e-13
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GHTK V SV FS +   + S+S D+ IK+W
Sbjct:   43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.156e-13
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            D+ ++    S+   ++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+ L
Sbjct:  108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

HSP 2 Score: 33.8834 bits (76), Expect = 3.156e-13
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GHTK V SV FS +   + S+S D+ IK+W
Sbjct:   43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.091e-13
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 3 
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            D+ ++    S    ++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+ L
Sbjct:  135 DKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 233

HSP 2 Score: 33.8834 bits (76), Expect = 4.091e-13
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GH   +  VA+S D+R +VS S D+T+K+W
Sbjct:  112 GHKLGISDVAWSSDSRLLVSGSDDKTLKVW 141

HSP 3 Score: 53.5286 bits (127), Expect = 5.846e-11
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 3 
Query:  192 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            +VS S D+T+KVW LS  K   TL GH+ YV     +P  +L  SG  D  + +WD+  GK L
Sbjct:  129 LVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 191

HSP 4 Score: 32.7278 bits (73), Expect = 5.846e-11
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GHTK V +V FS +   + S+S D+ IK+W
Sbjct:   70 GHTKAVSAVKFSPNGEWLASSSADKLIKIW 99
[Close]
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.100e-13
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:  132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374
            + H E +S + +S ++    I SAS D+T+K+W++ + K+  TL GH  YV  V+ +P  +L  SG  D  + +WD+  G+
Sbjct:   85 EGHKEGISDIAWSQDS--KLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGE 163

HSP 2 Score: 38.1206 bits (87), Expect = 4.100e-13
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GH K + SV FS D + + SAS D+TIK+W
Sbjct:   44 GHLKSISSVKFSPDGKWLASASADKTIKIW 73
The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
WD51A_HUMAN2.418e-1338.67WD repeat-containing protein 51A OS=Homo sapiens G... [more]
WD51A_BOVIN2.418e-1337.33WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
TUP1_DICDI3.113e-1335.29General transcriptional corepressor tupA OS=Dictyo... [more]
WDR5_XENTR3.156e-1331.68WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT3.156e-1331.68WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE3.156e-1331.68WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN3.156e-1331.68WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN3.156e-1331.68WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDS_DROME4.091e-1331.68Protein will die slowly OS=Drosophila melanogaster... [more]
WDR5_DICDI4.100e-1334.57WD repeat-containing protein 5 homolog OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-953 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bp
GGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTCA
GATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACCGCTC
GGCGAGTGCAAGTACACCGATTCAAGAGGGAGACGCTCACACTGAGTGGG
TTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCC
GCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCT
TAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGT
CGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTG
TTGTGGGATTTGGCTGAGGGAAAAAGACTCTACT
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