CF504464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 5.235e-13 Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362 HT+ V C+RFSP+ + SAS D +VK+W+L+ K+ A L+ H G VN + P+ L ASG D + WDL Sbjct: 146 HTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218 HSP 2 Score: 32.3426 bits (72), Expect = 5.235e-13 Identity = 17/45 (37.78%), Postives = 23/45 (51.11%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135 GH +V S+ F + S S D IKLW+ R+ V R+K T Sbjct: 103 GHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHT 147
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 6.798e-13 Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362 HT+ V C+RFSP+ + SAS D +VK+W+L+ K+ A L+ H G VN + P+ L ASG D + WDL Sbjct: 146 HTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218 HSP 2 Score: 31.9574 bits (71), Expect = 6.798e-13 Identity = 17/45 (37.78%), Postives = 23/45 (51.11%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135 GH +V S+ F + S S D IKLW+ R+ V R+K T Sbjct: 103 GHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHT 147
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 6.898e-13 Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374 HT +V C F+P + +VS S+D +V++W++ TL H+ V+ V+ + DGSL SG DG++ +WD A G+ Sbjct: 162 HTNYVFCCNFNPQS--SLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQ 238 HSP 2 Score: 30.0314 bits (66), Expect = 6.898e-13 Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90 GH V A+S D++ IV+AS D+T+K++ Sbjct: 119 GHKLGVNDFAWSADSKSIVTASDDKTLKIY 148
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 8.832e-13 Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 3 Query: 75 YDQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380 +DQ + S P++ H V CV F PN+ +++ S D+T ++W++ GHT V VA++PDG AS +G+I LWD+ G+R+ Sbjct: 441 HDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAY--VLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRI 540 HSP 2 Score: 28.4906 bits (62), Expect = 8.832e-13 Identity = 13/31 (41.94%), Postives = 17/31 (54.84%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GHT V VAF +AS D+T +LW+ Sbjct: 419 GHTGPVWDVAFGPFGHYFATASHDQTAQLWS 449
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.955e-12 Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380 H VSCVRF+P+ Q ++S+S D+T+KVW + TL GH +V + VS DGS AS D I W++ +G+ L Sbjct: 189 HDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECL 267 HSP 2 Score: 28.8758 bits (63), Expect = 1.955e-12 Identity = 13/31 (41.94%), Postives = 16/31 (51.61%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GHT V + F + S S D TIKLW+ Sbjct: 146 GHTNAVQDIDFDKTGNLLASCSADLTIKLWD 176
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 5.407e-12 Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 3 Query: 132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362 + H+E V+C F+ + + + S D +K+W+L+ + R T+ GHT V SPD L AS DG + LWD+ Sbjct: 696 EEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDV 772 HSP 2 Score: 33.8834 bits (76), Expect = 5.407e-12 Identity = 14/44 (31.82%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135 H +VL AFS D+ I + S D+ +K+W++ VH ++ + Sbjct: 656 HEDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHS 699
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 5.414e-12 Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 3 Query: 120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380 ++E HT + V FSPN +A D+TVK+W+L L TL GH V +V+ SPDG + AS +D + LW GK L Sbjct: 594 LREFTGHTGSIYRVDFSPNG--KIFATAGQDQTVKIWDLDG-NLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTL 677 HSP 2 Score: 32.3426 bits (72), Expect = 5.414e-12 Identity = 16/30 (53.33%), Postives = 17/30 (56.67%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90 GH V SVA S I SASRD T+ LW Sbjct: 558 GHRDGVTSVAISSHKNLIASASRDGTVHLW 587 HSP 3 Score: 56.225 bits (134), Expect = 4.362e-11 Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 3 Query: 120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362 +Q H + V V FSP+ + S S DRTV++W+ + K A L GHT V+ SPDG S +DG I LWDL Sbjct: 635 LQTLKGHQDSVYSVSFSPDG--EILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDL 713 HSP 4 Score: 30.4166 bits (67), Expect = 4.362e-11 Identity = 11/31 (35.48%), Postives = 20/31 (64.52%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GHT + V FS + + +A +D+T+K+W+ Sbjct: 599 GHTGSIYRVDFSPNGKIFATAGQDQTVKIWD 629
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 7.122e-12 Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362 HT+ V C+ FSP+ + SAS D TVK+W+L K+ HT VN V P+ L ASG D + LWDL Sbjct: 146 HTQAVRCLAFSPDG--KWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDL 218 HSP 2 Score: 31.5722 bits (70), Expect = 7.122e-12 Identity = 16/45 (35.56%), Postives = 22/45 (48.89%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135 GH + S+ F + S S D IKLW+ R+ V R+K T Sbjct: 103 GHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHT 147
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3) HSP 1 Score: 50.447 bits (119), Expect = 9.318e-12 Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 3 Query: 192 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 +VS S D T+KVW++ KL L GH V TV S DG SGGKD ++ LW Sbjct: 459 LVSCSKDTTLKVWDVRTRKLSVDLPGHKDEVYTVDWSVDGKRVCSGGKDKMVRLW 513 HSP 2 Score: 38.5058 bits (88), Expect = 9.318e-12 Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GH K V VAFS D R IVSAS D +IKLW+ Sbjct: 400 GHQKLVNHVAFSPDGRYIVSASFDNSIKLWD 430
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.215e-11 Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 3 Query: 99 SASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374 +A+ T ++ H VS VRF P+ T+VSAS D+T++VW +S+ T +GH +V S DG S D +WD + G+ Sbjct: 176 TANQYTNVKTLHGHDHSVSSVRFMPDG--ETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGE 265 HSP 2 Score: 33.113 bits (74), Expect = 1.215e-11 Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARR 105 GHTK V+ V F + + S D T+KLW+TA + Sbjct: 145 GHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQ 179 The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bpback to top |