CF504464

Overview
NameCF504464
Unique NameCF504464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.235e-13
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL
Sbjct:  146 HTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218          

HSP 2 Score: 32.3426 bits (72), Expect = 5.235e-13
Identity = 17/45 (37.78%), Postives = 23/45 (51.11%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135
            GH  +V S+ F      + S S D  IKLW+  R+  V R+K  T
Sbjct:  103 GHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHT 147          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.798e-13
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL
Sbjct:  146 HTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218          

HSP 2 Score: 31.9574 bits (71), Expect = 6.798e-13
Identity = 17/45 (37.78%), Postives = 23/45 (51.11%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135
            GH  +V S+ F      + S S D  IKLW+  R+  V R+K  T
Sbjct:  103 GHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHT 147          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.898e-13
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374
            HT +V C  F+P +    +VS S+D +V++W++       TL  H+  V+ V+ + DGSL  SG  DG++ +WD A G+
Sbjct:  162 HTNYVFCCNFNPQS--SLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQ 238          

HSP 2 Score: 30.0314 bits (66), Expect = 6.898e-13
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GH   V   A+S D++ IV+AS D+T+K++
Sbjct:  119 GHKLGVNDFAWSADSKSIVTASDDKTLKIY 148          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.832e-13
Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 3
Query:   75 YDQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            +DQ  +  S     P++    H   V CV F PN+    +++ S D+T ++W++          GHT  V  VA++PDG   AS   +G+I LWD+  G+R+
Sbjct:  441 HDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAY--VLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRI 540          

HSP 2 Score: 28.4906 bits (62), Expect = 8.832e-13
Identity = 13/31 (41.94%), Postives = 17/31 (54.84%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GHT  V  VAF        +AS D+T +LW+
Sbjct:  419 GHTGPVWDVAFGPFGHYFATASHDQTAQLWS 449          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.955e-12
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            H   VSCVRF+P+  Q  ++S+S D+T+KVW  +      TL GH  +V  + VS DGS  AS   D  I  W++ +G+ L
Sbjct:  189 HDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECL 267          

HSP 2 Score: 28.8758 bits (63), Expect = 1.955e-12
Identity = 13/31 (41.94%), Postives = 16/31 (51.61%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GHT  V  + F      + S S D TIKLW+
Sbjct:  146 GHTNAVQDIDFDKTGNLLASCSADLTIKLWD 176          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.407e-12
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 3
Query:  132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            + H+E V+C  F+  +    + + S D  +K+W+L+  + R T+ GHT  V     SPD  L AS   DG + LWD+
Sbjct:  696 EEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDV 772          

HSP 2 Score: 33.8834 bits (76), Expect = 5.407e-12
Identity = 14/44 (31.82%), Postives = 25/44 (56.82%), Query Frame = 1
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135
            H  +VL  AFS D+  I + S D+ +K+W++     VH ++  +
Sbjct:  656 HEDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHS 699          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.414e-12
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 3
Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            ++E   HT  +  V FSPN       +A  D+TVK+W+L    L  TL GH   V +V+ SPDG + AS  +D  + LW    GK L
Sbjct:  594 LREFTGHTGSIYRVDFSPNG--KIFATAGQDQTVKIWDLDG-NLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTL 677          

HSP 2 Score: 32.3426 bits (72), Expect = 5.414e-12
Identity = 16/30 (53.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            GH   V SVA S     I SASRD T+ LW
Sbjct:  558 GHRDGVTSVAISSHKNLIASASRDGTVHLW 587          

HSP 3 Score: 56.225 bits (134), Expect = 4.362e-11
Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            +Q    H + V  V FSP+     + S S DRTV++W+  + K  A L GHT  V+    SPDG    S  +DG I LWDL
Sbjct:  635 LQTLKGHQDSVYSVSFSPDG--EILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDL 713          

HSP 4 Score: 30.4166 bits (67), Expect = 4.362e-11
Identity = 11/31 (35.48%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GHT  +  V FS + +   +A +D+T+K+W+
Sbjct:  599 GHTGSIYRVDFSPNGKIFATAGQDQTVKIWD 629          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.122e-12
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 362
            HT+ V C+ FSP+     + SAS D TVK+W+L   K+      HT  VN V   P+  L ASG  D  + LWDL
Sbjct:  146 HTQAVRCLAFSPDG--KWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDL 218          

HSP 2 Score: 31.5722 bits (70), Expect = 7.122e-12
Identity = 16/45 (35.56%), Postives = 22/45 (48.89%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRET 135
            GH   + S+ F      + S S D  IKLW+  R+  V R+K  T
Sbjct:  103 GHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHT 147          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3)

HSP 1 Score: 50.447 bits (119), Expect = 9.318e-12
Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 3
Query:  192 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            +VS S D T+KVW++   KL   L GH   V TV  S DG    SGGKD ++ LW
Sbjct:  459 LVSCSKDTTLKVWDVRTRKLSVDLPGHKDEVYTVDWSVDGKRVCSGGKDKMVRLW 513          

HSP 2 Score: 38.5058 bits (88), Expect = 9.318e-12
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GH K V  VAFS D R IVSAS D +IKLW+
Sbjct:  400 GHQKLVNHVAFSPDGRYIVSASFDNSIKLWD 430          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.215e-11
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 3
Query:   99 SASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374
            +A+  T ++    H   VS VRF P+    T+VSAS D+T++VW +S+     T +GH  +V     S DG    S   D    +WD + G+
Sbjct:  176 TANQYTNVKTLHGHDHSVSSVRFMPDG--ETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGE 265          

HSP 2 Score: 33.113 bits (74), Expect = 1.215e-11
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARR 105
            GHTK V+ V F      + + S D T+KLW+TA +
Sbjct:  145 GHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQ 179          
The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
KTNB1_XENLA5.235e-1342.67Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENTR6.798e-1342.67Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
TG125_CAEBR6.898e-1336.71WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
TAF5_SCHPO8.832e-1332.35Transcription initiation factor TFIID subunit 5 OS... [more]
LIS1_DICDI1.955e-1240.74Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
APAF_RAT5.407e-1235.06Apoptotic protease-activating factor 1 OS=Rattus n... [more]
Y143_SYNY35.414e-1239.08Uncharacterized WD repeat-containing protein slr01... [more]
KTNB1_DANRE7.122e-1242.67Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
YCW2_YEAST9.318e-1247.27WD repeat-containing protein YCR072C OS=Saccharomy... [more]
NUDF_CRYNE1.215e-1133.70Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-953 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bp
GGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTCA
GATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACCGCTC
GGCGAGTGCAAGTACACCGATTCAAGAGGGAGACGCTCACACTGAGTGGG
TTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCC
GCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCT
TAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGT
CGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTG
TTGTGGGATTTGGCTGAGGGAAAAAGACTCTACT
back to top