CF504464

Overview
NameCF504464
Unique NameCF504464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 50.8322 bits (120), Expect = 2.017e-11
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374
            H   V    F+P + Q  + S S DRT+++WN+   +   TL GHTG +  +     G+   S   DG++ +W L+ G+
Sbjct:  506 HRRGVWACSFNPFSRQ--LASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582          

HSP 2 Score: 36.965 bits (84), Expect = 2.017e-11
Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTA 99
            H +DV ++  S D R I SAS+D+TIKLW+++
Sbjct:  464 HDRDVNAIQVSKDGRIIASASQDKTIKLWDSS 495          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.040e-11
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 3
Query:  138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            HT +V C  F+P +    I SA +D TV+VW+         +  H+  + +++ + DG+  A+   DG I +WD A G  L
Sbjct:  296 HTNYVFCCSFNPQS--SLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGSCL 374          

HSP 2 Score: 34.6538 bits (78), Expect = 2.040e-11
Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRETLTLSGF 153
            GHTK V  + FS   + + + S D+ IK+WNT     +       L ++ F
Sbjct:  211 GHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDF 261          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.054e-11
Identity = 30/98 (30.61%), Postives = 52/98 (53.06%), Query Frame = 3
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 371
            D++V+    S+   ++    HT +V C  F+P+     I S S+D T+++W   N     ++ GH   V++V  + DG+  ASG  DG++ +WD   G
Sbjct:  169 DKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGT--LIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTG 264          

HSP 2 Score: 28.8758 bits (63), Expect = 2.054e-11
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLW 90
            H K +  + FS D R + S S D +IK+W
Sbjct:  106 HKKSISGIKFSPDGRYMGSGSADCSIKIW 134          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 3.383e-11
Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 3
Query:  132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V+  P+  +  +G +DG + +W
Sbjct:  182 DAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 32.3426 bits (72), Expect = 3.383e-11
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWN 93
            GH+  V+ V F+  D     SAS DRTIK+WN
Sbjct:  140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.489e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   75 YDQVVEHRSASASTPI---QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            +D  V      ASTP+      + HT  +SC+ +S + L   + S SWD+T+ VW  +   L   L GHT +VN++A SPD    AS G    + +WD   GK L
Sbjct:  172 WDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGL---LASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCL 273          

HSP 2 Score: 23.0978 bits (48), Expect = 3.489e-11
Identity = 9/31 (29.03%), Postives = 16/31 (51.61%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GH   + S  FS  +  + + S D T+ +W+
Sbjct:  150 GHCDSIQSSDFSPTSDSLATGSWDSTVHIWD 180          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 4.390e-11
Identity = 25/75 (33.33%), Postives = 40/75 (53.33%), Query Frame = 3
Query:  132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V   P+  +  +G +DG + +W
Sbjct:  182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 32.3426 bits (72), Expect = 4.390e-11
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWN 93
            GH+  V+ V F+  D     SAS DRTIK+WN
Sbjct:  140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.422e-11
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 3
Query:   75 YDQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 371
            YD+     +  ++  ++    H   V CV+F PN+    + + S DRTV++W+    +    + GH G V+++A S  G   ASG  D  I++WDL+ G
Sbjct:  512 YDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNY--VATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNG 608          

HSP 2 Score: 30.0314 bits (66), Expect = 4.422e-11
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GHT  V   AF+ +   ++S S D TI+LW+
Sbjct:  448 GHTGPVYRCAFAPEMNLLLSCSEDSTIRLWS 478          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.459e-11
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 3
Query:  123 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-------SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380
            + G+ H + V  V FS N  Q  I S S DRTVK+W+L       S C++  T  GH  +V +V  +PD     SG KD  ++ WD A G  L
Sbjct:  383 ENGNGHEDSVYSVAFSNNGEQ--IASGSLDRTVKLWHLEGKSDKKSTCEV--TYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNPL 471          

HSP 2 Score: 28.8758 bits (63), Expect = 4.459e-11
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 1
Query:   16 VLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHR 120
            V +VA S D + I + S DRT+++W++     V R
Sbjct:  343 VTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVER 377          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR88_HUMAN (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.469e-11
Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 3
Query:  105 SASTPIQEGDAHTEWVS--CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR------ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 377
            S +T +    AH+  +S  C  FS + L     ++SWD+ +K+WN+   + R        + GH G V++   + D S   SGG D  + +WD+AEG R
Sbjct:  261 SQATLLTITKAHSNAISNCCFTFSGHFL----CTSSWDKNLKIWNVHTGEFRNRGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYR 355          

HSP 2 Score: 33.113 bits (74), Expect = 4.469e-11
Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 1
Query:    4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            HT+ + S  F  D++++ S S DR IK+W+
Sbjct:  229 HTRSITSCCFDPDSQRVASVSLDRCIKIWD 258          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.700e-11
Identity = 25/75 (33.33%), Postives = 40/75 (53.33%), Query Frame = 3
Query:  132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V   P+  +  +G +DG + +W
Sbjct:  182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 32.3426 bits (72), Expect = 5.700e-11
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWN 93
            GH+  V+ V F+  D     SAS DRTIK+WN
Sbjct:  140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWN 171          
The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
UTP13_SCHPO2.017e-1131.65Probable U3 small nucleolar RNA-associated protein... [more]
YH92_CAEEL2.040e-1132.10Uncharacterized WD repeat-containing protein ZC302... [more]
YZLL_CAEEL2.054e-1130.61Uncharacterized WD repeat-containing protein K04G1... [more]
COB21_ARATH3.383e-1133.33Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
WDR38_MOUSE3.489e-1136.19WD repeat-containing protein 38 OS=Mus musculus GN... [more]
COB22_ARATH4.390e-1133.33Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
TAF5_DROME4.422e-1131.31Transcription initiation factor TFIID subunit 5 OS... [more]
TUP1_CANAL4.459e-1138.71Transcriptional repressor TUP1 OS=Candida albicans... [more]
WDR88_HUMAN4.469e-1132.32WD repeat-containing protein 88 OS=Homo sapiens GN... [more]
COB23_ARATH5.700e-1133.33Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-953 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bp
GGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTCA
GATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACCGCTC
GGCGAGTGCAAGTACACCGATTCAAGAGGGAGACGCTCACACTGAGTGGG
TTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCC
GCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCT
TAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGT
CGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTG
TTGTGGGATTTGGCTGAGGGAAAAAGACTCTACT
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