CF504464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3) HSP 1 Score: 50.8322 bits (120), Expect = 2.017e-11 Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 374 H V F+P + Q + S S DRT+++WN+ + TL GHTG + + G+ S DG++ +W L+ G+ Sbjct: 506 HRRGVWACSFNPFSRQ--LASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582 HSP 2 Score: 36.965 bits (84), Expect = 2.017e-11 Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = 1 Query: 4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTA 99 H +DV ++ S D R I SAS+D+TIKLW+++ Sbjct: 464 HDRDVNAIQVSKDGRIIASASQDKTIKLWDSS 495
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 2.040e-11 Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 3 Query: 138 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380 HT +V C F+P + I SA +D TV+VW+ + H+ + +++ + DG+ A+ DG I +WD A G L Sbjct: 296 HTNYVFCCSFNPQS--SLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGSCL 374 HSP 2 Score: 34.6538 bits (78), Expect = 2.040e-11 Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHRFKRETLTLSGF 153 GHTK V + FS + + + S D+ IK+WNT + L ++ F Sbjct: 211 GHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDF 261
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.054e-11 Identity = 30/98 (30.61%), Postives = 52/98 (53.06%), Query Frame = 3 Query: 78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 371 D++V+ S+ ++ HT +V C F+P+ I S S+D T+++W N ++ GH V++V + DG+ ASG DG++ +WD G Sbjct: 169 DKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGT--LIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTG 264 HSP 2 Score: 28.8758 bits (63), Expect = 2.054e-11 Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1 Query: 4 HTKDVLSVAFSIDNRQIVSASRDRTIKLW 90 H K + + FS D R + S S D +IK+W Sbjct: 106 HKKSISGIKFSPDGRYMGSGSADCSIKIW 134
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 3.383e-11 Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 3 Query: 132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 DAH + V+CV + +P +++ S D T KVW+ TL GHT V+ V+ P+ + +G +DG + +W Sbjct: 182 DAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 32.3426 bits (72), Expect = 3.383e-11 Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWN 93 GH+ V+ V F+ D SAS DRTIK+WN Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.489e-11 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 75 YDQVVEHRSASASTPI---QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380 +D V ASTP+ + HT +SC+ +S + L + S SWD+T+ VW + L L GHT +VN++A SPD AS G + +WD GK L Sbjct: 172 WDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGL---LASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCL 273 HSP 2 Score: 23.0978 bits (48), Expect = 3.489e-11 Identity = 9/31 (29.03%), Postives = 16/31 (51.61%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GH + S FS + + + S D T+ +W+ Sbjct: 150 GHCDSIQSSDFSPTSDSLATGSWDSTVHIWD 180
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 4.390e-11 Identity = 25/75 (33.33%), Postives = 40/75 (53.33%), Query Frame = 3 Query: 132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 DAH + V+CV + +P +++ S D T KVW+ TL GHT V+ V P+ + +G +DG + +W Sbjct: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 32.3426 bits (72), Expect = 4.390e-11 Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWN 93 GH+ V+ V F+ D SAS DRTIK+WN Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 4.422e-11 Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 3 Query: 75 YDQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 371 YD+ + ++ ++ H V CV+F PN+ + + S DRTV++W+ + + GH G V+++A S G ASG D I++WDL+ G Sbjct: 512 YDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNY--VATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNG 608 HSP 2 Score: 30.0314 bits (66), Expect = 4.422e-11 Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GHT V AF+ + ++S S D TI+LW+ Sbjct: 448 GHTGPVYRCAFAPEMNLLLSCSEDSTIRLWS 478
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 4.459e-11 Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 123 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-------SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 380 + G+ H + V V FS N Q I S S DRTVK+W+L S C++ T GH +V +V +PD SG KD ++ WD A G L Sbjct: 383 ENGNGHEDSVYSVAFSNNGEQ--IASGSLDRTVKLWHLEGKSDKKSTCEV--TYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNPL 471 HSP 2 Score: 28.8758 bits (63), Expect = 4.459e-11 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 1 Query: 16 VLSVAFSIDNRQIVSASRDRTIKLWNTARRVQVHR 120 V +VA S D + I + S DRT+++W++ V R Sbjct: 343 VTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVER 377
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: WDR88_HUMAN (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 4.469e-11 Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 3 Query: 105 SASTPIQEGDAHTEWVS--CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR------ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 377 S +T + AH+ +S C FS + L ++SWD+ +K+WN+ + R + GH G V++ + D S SGG D + +WD+AEG R Sbjct: 261 SQATLLTITKAHSNAISNCCFTFSGHFL----CTSSWDKNLKIWNVHTGEFRNRGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYR 355 HSP 2 Score: 33.113 bits (74), Expect = 4.469e-11 Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 1 Query: 4 HTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 HT+ + S F D++++ S S DR IK+W+ Sbjct: 229 HTRSITSCCFDPDSQRVASVSLDRCIKIWD 258
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 5.700e-11 Identity = 25/75 (33.33%), Postives = 40/75 (53.33%), Query Frame = 3 Query: 132 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 DAH + V+CV + +P +++ S D T KVW+ TL GHT V+ V P+ + +G +DG + +W Sbjct: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 32.3426 bits (72), Expect = 5.700e-11 Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWN 93 GH+ V+ V F+ D SAS DRTIK+WN Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWN 171 The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bpback to top |