CF504466

Overview
NameCF504466
Unique NameCF504466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504466 vs. ExPASy Swiss-Prot
Match: PKPA_PHYBL (Serine/threonine-protein kinase pkpA OS=Phycomyces blakesleeanus GN=pkpA PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.163e-22
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    3 PVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAARCVGTPEFMAPEVYEEE-YNELVDIYSFGMCILEM 218
            P+IHRD+KCDNIF+NG  GE+KIGD+G A  ++       +GTPEFMAPE+YEE+ YNE VDIY+FGMC+LEM
Sbjct:  135 PIIHRDIKCDNIFINGAHGEIKIGDMGTAE-MKNGKKYTVIGTPEFMAPEMYEEQGYNEKVDIYAFGMCLLEM 206          
BLAST of CF504466 vs. ExPASy Swiss-Prot
Match: WNK9_ORYSJ (Probable serine/threonine-protein kinase WNK9 OS=Oryza sativa subsp. japonica GN=WNK9 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.066e-21
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 3
Query:    6 VIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAARCVGTPEFMAPEVYEEEYNELVDIYSFGMCILEMV 221
            +IHRDLKCDNIF+NGN G+VKIGD GLA  +++   +   GT EFMAPE+    YNELVDIYSFGMC+LEMV
Sbjct:  157 IIHRDLKCDNIFINGNHGKVKIGDFGLATFMQQQKKS-IKGTLEFMAPELLTGHYNELVDIYSFGMCMLEMV 227          
BLAST of CF504466 vs. ExPASy Swiss-Prot
Match: SKM1_YEAST (Serine/threonine-protein kinase SKM1 OS=Saccharomyces cerevisiae GN=SKM1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.366e-11
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:    6 VIHRDLKCDNIFVNGNQGEVKIGDLGLAAIL--RKSHAARCVGTPEFMAPEVYEEE-YNELVDIYSFGMCILEMV 221
            +IHRD+K DNI +N +QG VKI D G    L  ++S  A  VGTP +MAPE+  ++ Y+E VD++S G+ ++EM+
Sbjct:  503 IIHRDIKSDNILLN-SQGLVKITDFGFCVELTEKRSKRATMVGTPYWMAPEIVNQKGYDEKVDVWSLGIMLIEMI 576          
BLAST of CF504466 vs. ExPASy Swiss-Prot
Match: ZYG1_CAEEL (Probable serine/threonine-protein kinase zyg-1 OS=Caenorhabditis elegans GN=zyg-1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.621e-11
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3
Query:    6 VIHRDLKCDNIFVNGNQGE---VKIGDLGLAAIL-RKSHAARCVGTPEFMAPEVYEEEYNELVDIYSFGMCILEMV 221
            VIHRDL   N+F+  ++ +   VK+GD GLA  L R       VGTP F+AP+VY++EY +  D+YS G  +  M+
Sbjct:  127 VIHRDLSAGNVFIKDSKKKKMTVKLGDFGLATTLGRGETTCTIVGTPGFIAPQVYDQEYTQSADVYSLGAVLYTML 202          
The following BLAST results are available for this feature:
BLAST of CF504466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PKPA_PHYBL4.163e-2264.38Serine/threonine-protein kinase pkpA OS=Phycomyces... [more]
WNK9_ORYSJ2.066e-2166.67Probable serine/threonine-protein kinase WNK9 OS=O... [more]
SKM1_YEAST7.366e-1146.67Serine/threonine-protein kinase SKM1 OS=Saccharomy... [more]
ZYG1_CAEEL9.621e-1143.42Probable serine/threonine-protein kinase zyg-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-955 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504466 ID=CF504466; Name=CF504466; organism=Citrus sinensis; type=EST; length=221bp
CACCGGTGATTCATAGAGATCTCAAATGTGACAATATTTTTGTCAATGGA
AACCAAGGGGAAGTCAAGATTGGGGATCTTGGCCTTGCTGCAATCCTCCG
CAAATCTCATGCTGCTCGTTGTGTTGGAACGCCAGAGTTTATGGCCCCTG
AAGTGTATGAAGAGGAATACAATGAATTAGTCGATATATACTCTTTCGGA
ATGTGCATCTTGGAGATGGTC
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