CF504471

Overview
NameCF504471
Unique NameCF504471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2144 contig Csv1_Contig2144:15..418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 3
Query:  117 TGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSENV 341
            T + +G      +RGVR+RPWG++AAEIRDP K +RVWLGTFD                 G KAK NFP   ENV
Sbjct:  173 TSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP---ENV 244          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  123 NSNGIVKEV-HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSENVTNKI 353
            N   +VK V  +RGVR+RPWG++AAEIRDP  ++R+WLGTF T                G  A+TNF  P  + T ++
Sbjct:   88 NGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEV 165          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  135 IVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 326
            + +   FRGVR+RPWGR+AAEIRDP +  RVWLGT+DT                G  A TNFP+
Sbjct:   92 VTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPV 155          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  153 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 323
            ++G+R+RPWGR+AAEIRDP K  RVWLGTF+T                GAKAK NFP
Sbjct:   25 YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFP 81          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 3
Query:  153 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 323
            +RG+RKRPWG++AAEIRDP K  RVWLGTF+T                G KAK NFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  141 KEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 326
            K  H+RGVR+RPWG++AAEIRDP K  +RVWLGTF+T                G++A  NFPL
Sbjct:  144 KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  111 KLTGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 323
            K +G+     K + +RGVR+RPWG++AAEIRDP K  +RVWLGT++T                G+KAK NFP
Sbjct:   78 KASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  141 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 323
            K+  +RGVR+RPWG++AAEIRDP + +RVWLGTF+T                G +AK NFP
Sbjct:  132 KKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 3
Query:  138 VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 320
            ++E+ + GVR+RPWGRYAAEIR+P  K R WLGTFDT                G  A+TNF
Sbjct:   34 IEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  138 VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLP 329
            VK   +RGVR+RPWG++AAEIRDP  ++R+WLGTF T                G KA TNF  P
Sbjct:  100 VKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163          
The following BLAST results are available for this feature:
BLAST of CF504471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ABR1_ARATH1.997e-1148.00Ethylene-responsive transcription factor ABR1 OS=A... [more]
CRF5_ARATH2.608e-1142.31Ethylene-responsive transcription factor CRF5 OS=A... [more]
PTI6_SOLLC3.406e-1148.44Pathogenesis-related genes transcriptional activat... [more]
ERF73_ARATH3.406e-1154.39Ethylene-responsive transcription factor ERF073 OS... [more]
RAP23_ARATH4.448e-1154.39Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF100_ARATH4.448e-1150.79Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF99_ARATH5.810e-1145.83Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF109_ARATH5.810e-1149.18Ethylene-responsive transcription factor ERF109 OS... [more]
ERF87_ARATH7.588e-1149.18Ethylene-responsive transcription factor ERF087 OS... [more]
CRF6_ARATH7.588e-1148.44Ethylene-responsive transcription factor CRF6 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-960 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504471 ID=CF504471; Name=CF504471; organism=Citrus sinensis; type=EST; length=405bp
TTCCTTTTATGTTTTGTCACTCGCTCAAAACAACAAACACTACCCACTTG
AAATAAAAATATAATACGGAAATAATATGGCGCCGAGAGAGAAGGCGTCG
GGACCTGTAAAAGTTAACCGGAAACAGTAACGGTATTGTTAAAGAGGTGC
ATTTTAGGGGCGTTAGAAAGAGGCCGTGGGGTCGATATGCAGCCGAGATT
AGGGATCCCGGCAAGAAGAGCCGTGTTTGGCTTGGAACCTTCGACACCGC
TGAAGAAGCCGCTCGGGCCTACGACGCTGCTGCTAGAGAATTTCGCGGCG
CCAAGGCTAAAACAAACTTCCCCTTGCCTTCTGAAAATGTAACCAACAAA
ATTAGTCACAACAATATCAACATCAACAATAATAACCAGAGCCCCCAGCC
AAAGT
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