CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFI+DEMRK+SAE+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  341 SSACVLFIMDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPISA 394          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRKK AEE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  340 SSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.013e-21
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ +ATTGEG +WGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGRATTGEGFEWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.047e-20
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFI+DEMRKKSAE+  ATTGEGLDWGVLFGFGPGLTVETVVLHS+P
Sbjct:  341 SSACVLFIIDEMRKKSAEDGAATTGEGLDWGVLFGFGPGLTVETVVLHSLP 391          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.047e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFI+DEMRK+SAE+   TTGEG+DWGVLFGFGPGLTVETVVLHSVP+ A
Sbjct:  341 SSACVLFIMDEMRKRSAEDGHTTTGEGMDWGVLFGFGPGLTVETVVLHSVPVTA 394          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.047e-20
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ + TTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGQTTTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.047e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFI+DEMRK+SAE+   TTGEG+DWGVLFGFGPGLTVETVVLHSVP+ A
Sbjct:  339 SSACVLFIMDEMRKRSAEDGHTTTGEGMDWGVLFGFGPGLTVETVVLHSVPVTA 392          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS1_HORVU2.109e-2187.04Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS6_SORBI3.597e-2190.38Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI3.597e-2190.38Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS3_SORBI3.597e-2190.38Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHS3_RUTGR3.597e-2190.74Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHS2_SORBI8.013e-2188.46Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHSY_CALCH1.047e-2090.20Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS2_SECCE1.047e-2083.33Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_SORBI1.047e-2088.46Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]
CHS1_SECCE1.047e-2083.33Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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