CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KS +    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILD+MRKKS E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  337 SSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.349e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KS +    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVVI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.349e-18
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILD+MRKKS E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  337 SSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTL 388          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.293e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  338 SSACVLFILDEMRKKSTQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_FRAAN (Chalcone synthase RJ5 (Fragment) OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.083e-17
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDE+R+KSA     TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:   48 SSACVLFILDEVRRKSAANGHKTTGEGLEWGVLFGFGPGLTVETVVLHSV 97          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.083e-17
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  338 SSACVLFILDEMRKKSTQDGLNTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.415e-17
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILD+MRKKS E    TTGEGL+WGVLFGFGPGLTVETVVL SV +
Sbjct:  337 SSACVLFILDQMRKKSIENGLGTTGEGLEWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.415e-17
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS +    TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  338 SSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSG_PETHY (Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.847e-17
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLF+LDEMRK + E+   TTGEGL+WG+LFGFGPGLT+ETVVLHSV I
Sbjct:  341 SSACVLFVLDEMRKGTIEKGMGTTGEGLEWGLLFGFGPGLTIETVVLHSVSI 392          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS3_PEA4.862e-1880.77Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHS2_SOYBN4.862e-1882.69Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHS4_PEA6.349e-1880.77Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]
CHS1_SOYBN6.349e-1882.69Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]
CHS4_MEDSA8.293e-1880.77Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHSY_FRAAN1.083e-1784.00Chalcone synthase RJ5 (Fragment) OS=Fragaria anana... [more]
CHS2_PEA1.083e-1780.77Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHS6_SOYBN1.415e-1780.77Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS2_MEDSA1.415e-1780.77Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHSG_PETHY1.847e-1776.92Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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