CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS7_PICMA (Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 161
            SSACV FILDEMRK S E+  +TTGEGLD GVLFGFGPGLTVETVVL SVP++
Sbjct:  343 SSACVHFILDEMRKSSNEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ 395          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: 2PS_GERHY (2-pyrone synthase OS=Gerbera hybrida GN=2PS PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    6 SACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SACVLFI+DE+RK+S  E K+TTGEGLD GVLFGFGPG+TVETVVL SV + A
Sbjct:  344 SACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVRVTA 396          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 161
            SSACV FILDEMRK S +   +TTGEGLD GVLFGFGPGLTVETVVL SVP++
Sbjct:  343 SSACVHFILDEMRKSSQQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ 395          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSB_PETHY (Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSAC LFILDE+RKKSA E   T+G+GLD GVL  FGPGLT+ETVVL SVPI
Sbjct:  341 SSACCLFILDEIRKKSAREGMRTSGDGLDLGVLLSFGPGLTIETVVLRSVPI 392          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_EQUAR (Chalcone synthase OS=Equisetum arvense GN=CHS PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.031e-15
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFI+D MR+ SA+    TTGEGLDWGVL GFGPGLTVETV+L S+
Sbjct:  352 SSACVLFIMDHMRRMSAQNKLQTTGEGLDWGVLLGFGPGLTVETVLLKSI 401          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: DPSS_PINSY (Dihydropinosylvin synthase OS=Pinus sylvestris PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 161
            SSACV FILD+ RK S +   +TTGEGL+ GVLFGFGPGLT+ETVVL SVPI+
Sbjct:  341 SSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVPIQ 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSF_PETHY (Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            +SACVLF+LDEMRK S +E   T  EGL+WGVL  FGPGLT+ET+VLHSV I
Sbjct:  338 ASACVLFVLDEMRKTSTKEGFGTNVEGLEWGVLCSFGPGLTIETIVLHSVSI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSD_PETHY (Chalcone synthase D OS=Petunia hybrida GN=CHSD PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSA +LF+LDEMRK S ++   TTGEGL WGVL GFGPG+T ET+VLHSV
Sbjct:  338 SSASILFVLDEMRKSSTQKGFDTTGEGLKWGVLIGFGPGITFETIVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:   15 VLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            VLF+LD MRK+S +E  +TTGEGL+WGV+ GFGPGLTVET++L SVP +A
Sbjct:  353 VLFVLDYMRKRSVDERLSTTGEGLEWGVMLGFGPGLTVETLILKSVPTQA 402          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_VIGUN (Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACV F LDE+ +KS E    TTG+ L+WGVLFGFGPGL++ETVVLHSV I
Sbjct:  338 SSACVTFHLDEI-EKSVENGLKTTGKDLEWGVLFGFGPGLSLETVVLHSVAI 388          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS7_PICMA3.484e-1679.25Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 ... [more]
2PS_GERHY3.484e-1675.472-pyrone synthase OS=Gerbera hybrida GN=2PS PE=1 S... [more]
CHSY_PINST7.762e-1677.36Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHSB_PETHY3.852e-1575.00Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=... [more]
CHSY_EQUAR5.031e-1574.00Chalcone synthase OS=Equisetum arvense GN=CHS PE=2... [more]
DPSS_PINSY1.464e-1471.70Dihydropinosylvin synthase OS=Pinus sylvestris PE=... [more]
CHSF_PETHY1.912e-1469.23Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=... [more]
CHSD_PETHY3.261e-1470.00Chalcone synthase D OS=Petunia hybrida GN=CHSD PE=... [more]
VPS_PSINU4.259e-1468.00Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]
CHSY_VIGUN1.370e-1269.23Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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