CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: TBSYN_HYPAN (Trihydroxybenzophenone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:    6 SACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SACV+FILDE+RK S    K TTG+G ++G L G GPGLTVE VVL SVPI
Sbjct:  343 SACVMFILDELRKSSKVNGKPTTGDGKEFGCLIGLGPGLTVEAVVLQSVPI 393
[Close]
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: DPS2_PINST (Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACV FILDE RK S +   +T+G G   GVLFGFGPGLTVETVVL S+P
Sbjct:  344 SSACVHFILDETRKASRQNGCSTSGGGFQMGVLFGFGPGLTVETVVLKSIP 394
[Close]
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: DPS1_PINST (Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACV FILDE RK S +   +T+G G   GVLFGFGPGLTVETVVL S+P
Sbjct:  344 SSACVHFILDETRKASRQNGCSTSGGGFQMGVLFGFGPGLTVETVVLKSIP 394
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TBSYN_HYPAN1.789e-1266.67Trihydroxybenzophenone synthase OS=Hypericum andro... [more]
DPS2_PINST2.337e-1268.63Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=... [more]
DPS1_PINST2.337e-1268.63Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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