CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.977e-20
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KS E+  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  344 SSACVLFILDEMRRKSKEDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 395          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: THS4_VITVI (Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT00005194001 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.784e-20
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRKKS +E K TTGEGLDWGVLFGFGPGLT+ETVVLHSV
Sbjct:  338 SSACVLFILDEMRKKSLKEGKTTTGEGLDWGVLFGFGPGLTIETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.784e-20
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS +  +ATTGEGLDWGVLFGFGPGLT+ETVVLHS+P+
Sbjct:  338 SSACVLFILDEMRKKSLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIPM 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_DIAMO (Chalcone synthase OS=Dianthus monspessulanus GN=CHS PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.784e-20
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS  +   TTGEGLDWGVLFGFGPGLTVETVVLHSVP+
Sbjct:  338 SSACVLFILDEMRKKSLRDGATTTGEGLDWGVLFGFGPGLTVETVVLHSVPL 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.860e-20
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  343 SSACVLFILDEMRRKSLDDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 394          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.860e-20
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFILDEMRKKSA   +ATTG+GL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  342 SSACVLFILDEMRKKSARRREATTGDGLEWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRKKS EE K +TGEGL+WGVLFGFGPGLTVETVVLHSV   A
Sbjct:  338 SSACVLFILDEMRKKSIEEGKGSTGEGLEWGVLFGFGPGLTVETVVLHSVSAPA 391          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKSA++  ATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  343 SSACVLFILDEMRKKSAQDGVATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 394          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKSA++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRKKSAQQGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFILDEMRKKS ++ K TTGEGL+WGVLFGFGPGLTVETVVLHS+P
Sbjct:  344 SSACVLFILDEMRKKSIKDGKTTTGEGLEWGVLFGFGPGLTVETVVLHSLP 394          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS3_SINAL3.977e-2086.54Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
THS4_VITVI6.784e-2090.00Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT000... [more]
THS2_VITVI6.784e-2084.62Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]
CHSY_DIAMO6.784e-2086.54Chalcone synthase OS=Dianthus monspessulanus GN=CH... [more]
CHSY_RAPSA8.860e-2084.62Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHSY_CHRAE8.860e-2088.24Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHSY_VITVI1.157e-1985.19Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHSY_MATIN1.157e-1986.54Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS6_PEA1.157e-1986.54Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
CHS3_GERHY1.157e-1986.27Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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