CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.722e-18
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFILDEMRK S+     TTGEGL+WGVLFGFGPGLT+ETVVLHSVP
Sbjct:  337 SSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVP 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.722e-18
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_PUELO (Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KSAE    TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  338 SSACVLFILDEMRRKSAENGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S++E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASSKEGLNTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S++E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASSKEGLNTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S  E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASTNEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 161
            SSACVLFILDEMRK S+     TTGEGL+WGVLFGFGPGLT+ETVVLHSV IK
Sbjct:  337 SSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVLIK 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILD+MRKKS E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  337 SSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KS +    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILD+MRKKS E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  337 SSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS8_IPOBA3.722e-1882.35Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS1_SOLLC3.722e-1886.00Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_PUELO4.862e-1882.69Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 S... [more]
CHSE_IPOPU4.862e-1886.00Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSE_IPONI4.862e-1886.00Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHSA_SOLTU4.862e-1886.00Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS6_IPOBA4.862e-1881.13Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHS5_SOYBN4.862e-1882.69Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS5_PEA4.862e-1880.77Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS3_SOYBN4.862e-1882.69Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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