CF504477

Overview
NameCF504477
Unique NameCF504477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10885 contig Csv1_Contig10885:8..316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOUT (S-formylglutathione hydrolase frmB OS=Escherichia coli (strain UTI89 / UPEC) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAENE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOSM (S-formylglutathione hydrolase frmB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAGNE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOLC (S-formylglutathione hydrolase frmB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAANE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOL6 (S-formylglutathione hydrolase frmB OS=Escherichia coli O6 GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAENE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOL5 (S-formylglutathione hydrolase frmB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAENE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOK1 (S-formylglutathione hydrolase frmB OS=Escherichia coli O1:K1 / APEC GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAENE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOHS (S-formylglutathione hydrolase frmB OS=Escherichia coli O9:H4 (strain HS) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAANE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECO24 (S-formylglutathione hydrolase frmB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAANE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH2_SHISS (S-formylglutathione hydrolase yeiG OS=Shigella sonnei (strain Ss046) GN=yeiG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            +   + F G+ +R++H S+TL C M F I+           PVLYWLSGLTC DENF  K+GAQR A+  G
Sbjct:    4 LEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPP-PVLYWLSGLTCNDENFTTKAGAQRVAAELG 73          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH2_SHIF8 (S-formylglutathione hydrolase yeiG OS=Shigella flexneri serotype 5b (strain 8401) GN=yeiG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            +   + F G+ +R++H S+TL C M F I+           PVLYWLSGLTC DENF  K+GAQR A+  G
Sbjct:    4 LEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPP-PVLYWLSGLTCNDENFTTKAGAQRVAAELG 73          
The following BLAST results are available for this feature:
BLAST of CF504477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SFGH1_ECOUT1.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOSM1.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOLC1.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOL61.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOL51.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOK11.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOHS1.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECO241.499e-1147.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH2_SHISS1.957e-1146.48S-formylglutathione hydrolase yeiG OS=Shigella son... [more]
SFGH2_SHIF81.957e-1146.48S-formylglutathione hydrolase yeiG OS=Shigella fle... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-966 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504477 ID=CF504477; Name=CF504477; organism=Citrus sinensis; type=EST; length=309bp
CACTCTTTAATCTGCTGAAAGAACAAAGATCGTACACACACAGGGCGAGC
TCAACACAATCAATCACAGAGAAAAATGGAGACGAAGCCGACAGAGATAA
GCAGTTCTAAGATGTTCGGTGGATACAACAAAAGATTCAAGCATTTCAGT
ACAACACTGGGCTGCTCCATGAATTTCCACATCTACTTCCCTCCTTCTTC
TTCTCCATCCTACAAATTCCCTGTGCTTTACTGGCTCTCTGGTCTTACCT
GCACTGATGAAAATTTTATAGCTAAGTCAGGAGCTCAACGTGCTGCTTCC
GCTGAAGGT
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