CF504482

Overview
NameCF504482
Unique NameCF504482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length334
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:409..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.728e-15
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM+V I+ +GP M+QQ+Q  C ECKG GE IN KD
Sbjct:  106 KNVVHQLSVTLEDLYNGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKD 192
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.728e-15
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM++ I+ +GP M+QQ+Q  C ECKG GE IN KD
Sbjct:  106 KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKD 192
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KD
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KD
Sbjct:  104 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 190
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KD
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KD
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KD
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.259e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KD
Sbjct:  105 KNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            +D++H +KV+LEDLY G + KL+L + VI                     GSG+K   R +GP MIQ+MQ  C +C G GETI D+D
Sbjct:  108 KDLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSGVKFITRAMGP-MIQRMQMTCPDCNGAGETIRDED 193
The following BLAST results are available for this feature:
BLAST of CF504482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DNJA4_MOUSE1.728e-1545.98DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN1.728e-1544.83DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA1_RAT2.495e-1441.38DnaJ homolog subfamily A member 1 OS=Rattus norveg... [more]
DNJA1_PONAB2.495e-1441.38DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_MOUSE2.495e-1441.38DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
DNJA1_HUMAN2.495e-1441.38DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNAJ1_CERAE2.495e-1441.38DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA1_BOVIN3.259e-1441.38DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
MAS5_SCHPO6.796e-1241.38Mitochondrial protein import protein mas5 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-971 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504482 ID=CF504482; Name=CF504482; organism=Citrus sinensis; type=EST; length=334bp
TATTCCAATCCTTCTTCGGTGGCAGCCCATTTGGTGGTGGGAGCAGCAGA
GGAAGAAGGCAAAGGAGGGGAGAGGATGTAATCCATCCCCTCAAGGTTTC
TTTGGAGGATCTCTACAATGGGACATCTAAGAAGCTCTCGCTCTCCCGCA
ATGTAATCTGCACCAAGTGCAAAGGGAAGGGGTCTAAGTCAGGTGCATCA
ATGAAATGTTCTGGCTGCCAGGGATCTGGAATGAAAGTTTCAATAAGACA
CCTTGGCCCCTCTATGATTCAACAAATGCAGCATCCTTGCAATGAGTGCA
AGGGTACTGGAGAAACAATCAATGACAAGGATCG
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