CF504500

Overview
NameCF504500
Unique NameCF504500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH4_MOUSE (Cytohesin-4 OS=Mus musculus GN=Cyth4 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 2 
Query:    2 LKPASDLT--QMGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL----------------------STRTETMYFIADSEKEKEDWINSIGRSIVQ 406
            +   SDL   Q+ +L+ +I  +   + + D    T  + NP+R GWL K G  +KTW+RRWF+L    L++F+    T   +PRG+IP+ + L+V+  ED   K +  EL                        + E+    A + +E++ WI +I  SI +
Sbjct:  220 INSGSDLPEEQLRNLFDSIKSEPFSIPEDDGGDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE---FTTDKEPRGIIPLEN-LSVQKVEDP-KKPFCLELYNPSCRGQKIKACKTDGDGKVVEGKHESYRISAANAEERDQWIEAIRASITR 376
[Close]
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH3_RAT (Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 2 
Query:   83 DSTEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            D T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  257 DLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 380
[Close]
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH3_HUMAN (Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 2 
Query:   83 DSTEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            D T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  257 DLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 380
The following BLAST results are available for this feature:
BLAST of CF504500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYH4_MOUSE9.792e-1129.01Cytohesin-4 OS=Mus musculus GN=Cyth4 PE=2 SV=1[more]
CYH3_RAT9.792e-1136.43Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=... [more]
CYH3_HUMAN9.792e-1136.43Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-989 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504500 ID=CF504500; Name=CF504500; organism=Citrus sinensis; type=EST; length=412bp
TTTGAAGCCAGCAAGTGATTTGACACAAATGGGTAGCCTCTGGCGAGCCA
TATCGGGCCAAACAAACCAGCTCAGCGACTACGACAGCACTGAGTTCTGG
TCAAACCCCGAACGGTCCGGCTGGTTGACCAAACAAGGCGAGTACATAAA
AACTTGGCGTCGCCGTTGGTTCGTTTTAAAACAAGGCAAGCTCTTTTGGT
TCAAAGAATCTACTGTCACCCGCGCCTCCAAGCCACGTGGCGTTATTCCA
GTGGCCTCCTGCCTCACCGTCAAGGGAGCCGAAGATGTGTTGAATAAACA
GTACGCTTTTGAGCTGAGTACGAGGACTGAGACGATGTACTTCATCGCTG
ATTCCGAGAAGGAGAAAGAGGACTGGATCAACTCCATCGGACGCTCCATA
GTGCAGCACTCC
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