CF504503

Overview
NameCF504503
Unique NameCF504503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.428e-36
Identity = 74/158 (46.84%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD--PNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKK-----DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            VM+TWLPA+  +LE +   LPSP  +QK R + LYEGP DD+ ANAI+ CD     P+ +YVSKMIP++D  RF AFGRVFSGK+  G+K+R+  P Y PG ++      ++ KSV RTV+ MG+  + V + P GN + ++G+D  + K  T+TN +
Sbjct:  328 VMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCDGSDEAPVSMYVSKMIPSND-NRFIAFGRVFSGKIFPGMKIRVQEPGYSPGSEELSNTSLIHNKSVLRTVVMMGRGYKDVPNCPAGNIIGIIGIDDCLKKTGTITNRE 484          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  I + +    V  VP GN V + G+DQ I K AT+T  +
Sbjct:  428 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 569          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  I + +    V  VP GN V + G+DQ I K AT+T  +
Sbjct:  427 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 568          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  I + +    V  VP GN V + G+DQ I K AT+T  +
Sbjct:  428 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 569          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  I + +    V  VP GN V + G+DQ I K AT+T  +
Sbjct:  428 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 569          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.109e-23
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            +  ++M + H+PSP    K ++E+ Y G +D     A+  CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  I + +    V  VP GN V + G+DQ I K AT+T  +
Sbjct:  428 TGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPR 569          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.158e-17
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLP+P  AQKYR+ +L+ G ++     A+ NCDP GP+ + V+K+I     G   A GRV+SG V TG +V      Y+   K+      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVKHLPNPLEAQKYRIPHLWRGDINSDVGQAMMNCDPKGPMTMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.579e-17
Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   16 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            +P   ALLE +I  +P+P  AQKYR+  +++G LD   A A+ N DPNGP++L +S M      G   A GRVFSG +  G ++      ++   K+   V  V    ++MG  +E  E++P GN  A +GLDQ
Sbjct:  244 VPIHEALLETVIKFVPNPRDAQKYRIPKIWKGDLDSDIAKAMINADPNGPIVLMISDMKVDPHAG-LVATGRVFSGTLRAGEEI------WLVNAKRQQRVLQVS---LYMGPTRELAEEIPAGNIAAALGLDQ 367          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P    LL M+I H+P P+ AQKYR+  L+ G L+ +   A+   DPNGP ++ VSK+      G   A GRVFSG +  G ++      Y+ G K     K V +T I+MG  +  V  +P GN VA++G+D+
Sbjct:  247 PLYKTLLTMIIEHVPPPNVAQKYRIPRLWRGDLNSEIGKALLEADPNGPTVIAVSKVNKDPHAG-LIATGRVFSGTIREGDEI------YIIGRKMK---KKVLQTYIYMGPSRIIVPYMPAGNIVALMGVDE 369          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P    +L M+I H+P P+ AQKYR+  L+ G L+ +   A+   DPNGP ++ VSK+      G   A GRVFSG +  G +V I+G             K V +T I+MG  +  V  +P GN VA++G+D+
Sbjct:  247 PLYKTILSMIIEHIPPPNVAQKYRIPRLWRGELNSEVGKALLEADPNGPTVIAVSKVNKDPHAG-LIATGRVFSGTIREGDEVYIIGRR---------LKKKVLQTYIYMGPSRIIVPYMPAGNIVALMGVDE 369          
The following BLAST results are available for this feature:
BLAST of CF504503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EF2_ENCCU9.428e-3646.84Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
U5S1_PONAB3.146e-2336.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE3.146e-2336.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN3.146e-2336.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN3.146e-2336.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK4.109e-2336.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_PYRKO1.158e-1738.17Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_SULTO2.579e-1738.06Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_THENV3.369e-1738.35Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRAE3.369e-1737.59Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-992 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504503 ID=CF504503; Name=CF504503; organism=Citrus sinensis; type=EST; length=472bp
GTCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGAT
CTTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACT
TGTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGT
GATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATC
TGATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAAGGTGT
CAACAGGTTTGAAGGTCAGGATCATGGGTCCAAACTATGTTCCTGGTGAG
AAGAAAGATTTGTATGTTAAGAGCGTCCAAAGGACTGTTATTTGGATGGG
AAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTGGTAACACTGTGGCTA
TGGTTGGTCTCGATCAATTCATCACTAAAAATGCTACCTTGACTAATGAG
AAGGAAGTTGATGCCCATCCCA
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