CF504503
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 9.428e-36 Identity = 74/158 (46.84%), Postives = 105/158 (66.46%), Query Frame = 1 Query: 1 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD--PNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKK-----DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453 VM+TWLPA+ +LE + LPSP +QK R + LYEGP DD+ ANAI+ CD P+ +YVSKMIP++D RF AFGRVFSGK+ G+K+R+ P Y PG ++ ++ KSV RTV+ MG+ + V + P GN + ++G+D + K T+TN + Sbjct: 328 VMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCDGSDEAPVSMYVSKMIPSND-NRFIAFGRVFSGKIFPGMKIRVQEPGYSPGSEELSNTSLIHNKSVLRTVVMMGRGYKDVPNCPAGNIIGIIGIDDCLKKTGTITNRE 484
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23 Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453 + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + Sbjct: 428 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 569
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23 Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453 + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + Sbjct: 427 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 568
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23 Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453 + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + Sbjct: 428 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 569
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.146e-23 Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453 + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + Sbjct: 428 TGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPR 569
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.109e-23 Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1 Query: 28 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453 + ++M + H+PSP K ++E+ Y G +D A+ CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + Sbjct: 428 TGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPR 569
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.158e-17 Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411 P +L+M++ HLP+P AQKYR+ +L+ G ++ A+ NCDP GP+ + V+K+I G A GRV+SG V TG +V Y+ K+ +Q+ I+MG ++ +E VP GN VA+ GL Sbjct: 243 PLHVVVLDMVVKHLPNPLEAQKYRIPHLWRGDINSDVGQAMMNCDPKGPMTMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGL 363
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 2.579e-17 Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 16 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417 +P ALLE +I +P+P AQKYR+ +++G LD A A+ N DPNGP++L +S M G A GRVFSG + G ++ ++ K+ V V ++MG +E E++P GN A +GLDQ Sbjct: 244 VPIHEALLETVIKFVPNPRDAQKYRIPKIWKGDLDSDIAKAMINADPNGPIVLMISDMKVDPHAG-LVATGRVFSGTLRAGEEI------WLVNAKRQQRVLQVS---LYMGPTRELAEEIPAGNIAAALGLDQ 367
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17 Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 1 Query: 19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417 P LL M+I H+P P+ AQKYR+ L+ G L+ + A+ DPNGP ++ VSK+ G A GRVFSG + G ++ Y+ G K K V +T I+MG + V +P GN VA++G+D+ Sbjct: 247 PLYKTLLTMIIEHVPPPNVAQKYRIPRLWRGDLNSEIGKALLEADPNGPTVIAVSKVNKDPHAG-LIATGRVFSGTIREGDEI------YIIGRKMK---KKVLQTYIYMGPSRIIVPYMPAGNIVALMGVDE 369
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17 Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 1 Query: 19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417 P +L M+I H+P P+ AQKYR+ L+ G L+ + A+ DPNGP ++ VSK+ G A GRVFSG + G +V I+G K V +T I+MG + V +P GN VA++G+D+ Sbjct: 247 PLYKTILSMIIEHIPPPNVAQKYRIPRLWRGELNSEVGKALLEADPNGPTVIAVSKVNKDPHAG-LIATGRVFSGTIREGDEVYIIGRR---------LKKKVLQTYIYMGPSRIIVPYMPAGNIVALMGVDE 369 The following BLAST results are available for this feature:
BLAST of CF504503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504503 ID=CF504503; Name=CF504503; organism=Citrus sinensis; type=EST; length=472bpback to top |