CF504503

Overview
NameCF504503
Unique NameCF504503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.400e-17
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLPSP  AQKYR+ +L+EG +      A+ NCDP G +++ V+K+I     G   A GRV+SG V +G +V      Y+   K+      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVRHLPSPIEAQKYRIPHLWEGDISSDIGQAMLNCDPKGKMVMVVTKIIIDKHAGE-VATGRVWSGTVKSGQEV------YLINTKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.400e-17
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P    LL M+I H+P P+ AQKYR+  L+ G L+ +   A+   DPNGP ++ VSK+      G   A GRVFSG +  G ++      Y+ G K     K V +T I+MG  +  V  +P GN VA++G+D+
Sbjct:  247 PLYKTLLTMIIEHVPPPNVAQKYRIPRLWRGDLNSEVGKALLEADPNGPTVIAVSKVNKDPHAG-LIATGRVFSGTIREGDEI------YIIGRKMK---KKVLQTYIYMGPTRIIVPYMPAGNIVALMGVDE 369          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.400e-17
Identity = 52/133 (39.10%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P    LL M+I H+P P+ AQKYR+  L+ G L+ +   A+   DPNGP ++ VSK+      G   A GRVFSG +  G +V      Y+ G K     K V +T I+MG  +  V  +P GN VA++G+D+
Sbjct:  247 PLYKTLLTMIIEHVPPPNVAQKYRIPRLWRGDLNSEVGKAMLEADPNGPTVIAVSKVNKDPHAG-LIATGRVFSGTIREGDEV------YIIGRKMK---KKVLQTYIYMGPTRIIVPYMPAGNIVALMGVDE 369          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.505e-17
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P    LL M+I H+P P+ AQKYR+  L+ G L+ +   A+   DPNGP ++ VSK+      G     GRVFSG +  G ++      Y+ G K     K V +T I+MG  +  V  +P GN VA++G+D+
Sbjct:  247 PLYKTLLSMIIEHVPPPNVAQKYRIPRLWRGDLNSEVGKALLEADPNGPTVIAVSKVNKDPHAG-LIVTGRVFSGTIREGDEI------YIIGRKMK---KKVLQTYIYMGPSRIIVPYMPAGNIVALMGVDE 369          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.505e-17
Identity = 45/144 (31.25%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNE 450
            P    +L+M+I HLPSP  AQK R+  +++G ++ +   A+ NCDP GP+ L ++K++     G   A GR++SG +  G+++      Y+   K       +Q   ++MG ++  V+++P GN VA++GL   +  +   T E
Sbjct:  241 PLYQVVLDMVIRHLPSPIEAQKERIAVIWKGDINSEVGKAMVNCDPKGPVALMITKIVVEPQAGE-IAVGRLYSGTIRPGMEL------YIVDRKAK---NRIQTVGLYMGPRRVEVDEIPAGNIVAVIGLKDAVAGSTCTTVE 374          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRWO (Elongation factor 2 OS=Pyrococcus woesei GN=fusA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLPSP  AQKYR+ +L++G ++ +   A+ NCDP G +++ ++K+I     G   A GRV+SG V +G +V      Y+   K+      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVRHLPSPIEAQKYRIPHLWQGDINSKIGQAMLNCDPKGKMVMVITKIIIDKHAGE-VATGRVWSGTVRSGQEV------YLINSKRK---GRIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRFU (Elongation factor 2 OS=Pyrococcus furiosus GN=fusA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLPSP  AQKYR+ +L++G ++ +   A+ NCDP G +++ ++K+I     G   A GRV+SG V +G +V      Y+   K+      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVRHLPSPIEAQKYRIPHLWQGDINSKIGQAMLNCDPKGKMVMVITKIIIDKHAGE-VATGRVWSGTVRSGQEV------YLINSKRK---GRIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 414
            P    LL+M++  +P+P  AQKYRV  L++G ++ +   A+ NCDP GPL+++++ M       R  A GRV++G  + G +V ++     PG+        + +  I+MG  +E V+ V  GN VAM+GLD
Sbjct:  246 PLHETLLDMVVRWVPNPREAQKYRVPRLWKGDINSELGKAMLNCDPEGPLVVFINDMRLDPHTKRLVATGRVWAGTATAGKEVWLVNAQ-KPGK--------ILQVSIYMGPDREIVDYVTAGNIVAMLGLD 368          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.672e-16
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLP+P  AQKYR+ +L++G ++     A+ NCDP G +++ V+K+I     G   A GRV+SG V +G +V      Y+   K+      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVKHLPNPIEAQKYRIPHLWQGDINSDVGQAMLNCDPKGKMVMVVTKIIIDKHAGE-VATGRVWSGTVKSGQEV------YLINTKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P  + LL+M++ HLP+P  AQKYR+ N+++G L+ +   A+ NCDPNGP+   V+K+I     G   A  R+FSG++  G ++R++    +  + +       Q+  ++MG ++  V  V  GN  A+ GL +
Sbjct:  243 PLHAVLLDMVVTHLPNPVEAQKYRIPNIWKGDLESEIGKAMVNCDPNGPMAGVVTKIIMDKHAGAISAC-RLFSGRIKQGDELRLVS---IKAKAR------AQQVAVFMGAERVQVPSVSAGNICALTGLKE 365          
The following BLAST results are available for this feature:
BLAST of CF504503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EF2_PYRHO4.400e-1738.17Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_PYRCJ4.400e-1738.35Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_PYRAR4.400e-1739.10Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_PYRIL7.505e-1737.59Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_ARCFU7.505e-1731.25Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_PYRWO9.802e-1736.64Elongation factor 2 OS=Pyrococcus woesei GN=fusA P... [more]
EF2_PYRFU9.802e-1736.64Elongation factor 2 OS=Pyrococcus furiosus GN=fusA... [more]
EF2_IGNH49.802e-1735.61Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_PYRAB1.672e-1636.64Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_META32.184e-1633.83Elongation factor 2 OS=Methanococcus aeolicus (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-992 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504503 ID=CF504503; Name=CF504503; organism=Citrus sinensis; type=EST; length=472bp
GTCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGAT
CTTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACT
TGTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGT
GATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATC
TGATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAAGGTGT
CAACAGGTTTGAAGGTCAGGATCATGGGTCCAAACTATGTTCCTGGTGAG
AAGAAAGATTTGTATGTTAAGAGCGTCCAAAGGACTGTTATTTGGATGGG
AAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTGGTAACACTGTGGCTA
TGGTTGGTCTCGATCAATTCATCACTAAAAATGCTACCTTGACTAATGAG
AAGGAAGTTGATGCCCATCCCA
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