CF504503

Overview
NameCF504503
Unique NameCF504503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3352 contig Csv1_Contig3352:219..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 46/131 (35.11%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLP+P  AQKYR+ +L+ G ++ +   ++ +C+P G +++ V+K+I     G   A GRV+SG V TG +V I     +  ++K      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVRHLPNPVEAQKYRIPHLWRGEIESEIGQSMASCNPKGKMVMVVTKIIIDKHAGE-VATGRVWSGTVKTGQEVHI-----ITAKRK----ARIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLP+P  AQKYR+ +L+ G ++     A+  CDP G +++ V+K+I     G   A GRV+SG V TG +V      Y+   K+      +Q+  I+MG ++  +E VP GN VA+ GL
Sbjct:  243 PLHVVVLDMVVRHLPNPLEAQKYRIPHLWRGDINSDVGQAMLKCDPKGKMVMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 47/133 (35.34%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P    +L+M+I HLPSP  AQKYR+ +L++G L+ +   A+ NCDPNGPL   ++K+I     G   +  R+FSG++  G +V +     V  ++K      +Q+  ++MG ++  V+ +  GN  A+VGL +
Sbjct:  243 PLHEVVLDMVIKHLPSPPEAQKYRIPHLWKGDLNSEAGKAMLNCDPNGPLAGVITKIIVDKHAGA-VSVCRLFSGRIKQGDEVYM-----VNNQQK----AKIQQVSVFMGPERIPVDSISAGNICALVGLKE 365          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P    +L+M++ HLP+P  AQKYR+ +L+ G ++     A+ NCDP G +++ V+K+I     G   A GRV+SG V TG +V      Y+   K+      +Q+  I+MG ++  +E V  GN VA+ GL
Sbjct:  243 PLHVVVLDMVVRHLPNPLEAQKYRIPHLWRGDINSDVGQAMINCDPKGKMVMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERVNMEAVQAGNIVAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULSO (Elongation factor 2 OS=Sulfolobus solfataricus GN=fusA PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTV---IWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P + ALL+  I  +P+P  AQKYR+  +++G LD++ A A+ N DPNGP++  ++ M      G   A GRVFSG + +G ++ ++              K+ QR +   ++MG  +E  E++P GN  A++GLD+
Sbjct:  245 PINEALLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAG-LVATGRVFSGTLRSGEELWLVN------------AKTSQRILQVSLYMGPTRELAEEIPAGNIAAVLGLDR 367          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULIY (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTV---IWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P + ALL+  I  +P+P  AQKYR+  +++G LD++ A A+ N DPNGP++  ++ M      G   A GRVFSG + +G ++ ++              K+ QR +   ++MG  +E  E++P GN  A++GLD+
Sbjct:  245 PINEALLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAG-LVATGRVFSGTLRSGEELWLVN------------AKTSQRILQVSLYMGPTRELAEEIPAGNIAAVLGLDR 367          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULIN (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTV---IWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P + ALL+  I  +P+P  AQKYR+  +++G LD++ A A+ N DPNGP++  ++ M      G   A GRVFSG + +G ++ ++              K+ QR +   ++MG  +E  E++P GN  A++GLD+
Sbjct:  245 PINEALLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAG-LVATGRVFSGTLRSGEELWLVN------------AKTSQRILQVSLYMGPTRELAEEIPAGNIAAVLGLDR 367          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULIM (Elongation factor 2 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTV---IWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P + ALL+  I  +P+P  AQKYR+  +++G LD++ A A+ N DPNGP++  ++ M      G   A GRVFSG + +G ++ ++              K+ QR +   ++MG  +E  E++P GN  A++GLD+
Sbjct:  245 PINEALLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAG-LVATGRVFSGTLRSGEELWLVN------------AKTSQRILQVSLYMGPTRELAEEIPAGNIAAVLGLDR 367          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULIL (Elongation factor 2 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTV---IWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P + ALL+  I  +P+P  AQKYR+  +++G LD++ A A+ N DPNGP++  ++ M      G   A GRVFSG + +G ++ ++              K+ QR +   ++MG  +E  E++P GN  A++GLD+
Sbjct:  245 PINEALLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAG-LVATGRVFSGTLRSGEELWLVN------------AKTSQRILQVSLYMGPTRELAEEIPAGNIAAVLGLDR 367          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_SULIK (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTV---IWMGKKQETVEDVPCGNTVAMVGLDQ 417
            P + ALL+  I  +P+P  AQKYR+  +++G LD++ A A+ N DPNGP++  ++ M      G   A GRVFSG + +G ++ ++              K+ QR +   ++MG  +E  E++P GN  A++GLD+
Sbjct:  245 PINEALLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAG-LVATGRVFSGTLRSGEELWLVN------------AKTSQRILQVSLYMGPTRELAEEIPAGNIAAVLGLDR 367          
The following BLAST results are available for this feature:
BLAST of CF504503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EF2_THESM3.725e-1635.11Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_THEGJ3.725e-1636.64Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_METJA3.725e-1635.34Elongation factor 2 OS=Methanocaldococcus jannasch... [more]
EF2_THEON6.353e-1636.64Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_SULSO6.353e-1634.56Elongation factor 2 OS=Sulfolobus solfataricus GN=... [more]
EF2_SULIY6.353e-1634.56Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIN6.353e-1634.56Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIM6.353e-1634.56Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIL6.353e-1634.56Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIK6.353e-1634.56Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-992 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504503 ID=CF504503; Name=CF504503; organism=Citrus sinensis; type=EST; length=472bp
GTCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGAT
CTTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACT
TGTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGT
GATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATC
TGATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAAGGTGT
CAACAGGTTTGAAGGTCAGGATCATGGGTCCAAACTATGTTCCTGGTGAG
AAGAAAGATTTGTATGTTAAGAGCGTCCAAAGGACTGTTATTTGGATGGG
AAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTGGTAACACTGTGGCTA
TGGTTGGTCTCGATCAATTCATCACTAAAAATGCTACCTTGACTAATGAG
AAGGAAGTTGATGCCCATCCCA
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