CF504503

Overview
NameCF504503
Unique NameCF504503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   34 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            +L M+I HLP P TAQ YR++ +++G L+ +   ++ +CD  GP+ + V+K+I     G   A GR+FSG V  G  +      Y+ G+ K      VQ   + +G  +  VE+V  GN  A+VGL
Sbjct:  248 ILNMVIRHLPDPKTAQSYRIKQIWKGDLETEVGKSMVSCDFKGPVAMMVTKIIIDPHAGE-IAIGRLFSGTVKKGTDL------YISGDGKG----KVQTLAMMVGPDRIPVEEVTAGNIAAIVGL 362          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 459
            P    +L+M I HLP+P  AQKYR+ N+++G  + +   ++  CDPNGPL   V+K+I     G   A  R+FSG++  G  +      Y+ G K+       Q+  I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+
Sbjct:  243 PLHEVILDMAIKHLPNPLQAQKYRIPNIWKGDAESEIGKSMVACDPNGPLAGVVTKIIVDKHAGAISAC-RLFSGRIKQGDDL------YLVGSKQK---ARAQQVSIFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEI 378          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.553e-14
Identity = 40/138 (28.99%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   55 HLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVD 462
            H+PSP      +    Y GP++     AI     + + PL+++V+K+    D   F+AF RV+SG+V  G KV+++G NY   +++D+ V  +    +   + +  V+    G  V + G+D  I+K AT+ ++   D
Sbjct:  448 HIPSPRENAARKASQSYIGPINSSIGKAILEMSREESAPLVMHVTKLYNTVDANNFYAFARVYSGQVKKGQKVKVLGENYSLEDEEDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGGVDNSISKTATIVSDNLKD 585          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.947e-14
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 459
            P    +L+M I HLP+P  AQKYR+ N+++G  +     ++  CDPNGPL   V+K+I     G   A  R+FSG++  G  +      Y+ G K+       Q+  I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+
Sbjct:  243 PLHEVILDMAITHLPNPLQAQKYRIPNIWKGDSESTIGKSMVACDPNGPLAGVVTKIIVDKHAGAISAC-RLFSGRIKQGDDL------YLVGSKQK---ARAQQVSIFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEI 378          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.767e-14
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 459
            P  + LL+M++ HLP P  AQK R+  ++ G  +     ++   DPNGP+ + V+ +      G   A GR+FSG +  G ++ I+G          +    VQ+  I+MG  +  VE++P GN  A+ GL   I   +T+TN +E+
Sbjct:  243 PLHAVLLDMVVKHLPDPFDAQKRRINVIWHGDKESVEGKSMLTADPNGPIAMMVTDISFDPHAGE-VATGRLFSGTLRRGTELYIIG--------SAMKANRVQQVGIFMGPTRVEVEELPAGNIAAVTGLKDAIV-GSTVTNLREM 379          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 411
            P   A+ +M+I  LPSP  AQK R+  +++G  +     A+  CDPNGP+   V+K+      G   A GR+FSG +  G+++ I G   VP      +   +Q+T I MG ++  VE +P GN  A+ GL
Sbjct:  243 PLYVAVNDMIIRFLPSPLEAQKNRIRVIWKGDWNSPVGKAMTACDPNGPVAFMVTKIKVDPHAGE-VATGRLFSGTLVRGMELHISG---VP------HTNRIQQTGIMMGAERIEVERIPAGNIAAVTGL 363          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 459
            P    +L+M I HLP+P  AQKYR+ N+++G  +     ++  C+PNGPL   V+K+I     G   A  R+FSG++  G  +      Y+ G K+       Q+  I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+
Sbjct:  243 PLHEVVLDMSIKHLPNPLQAQKYRIPNIWKGDAESAIGKSMVECNPNGPLAGVVTKIIVDKHAGAISAC-RLFSGRIKQGDDL------YLVGSKQK---ARAQQVSIFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEI 378          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            +Q   P   A+L+M++  +P+P  AQKYR+  ++ G L+ +   A+   DPNGPL++ V+  +         A GRVFSG +  G +V ++              + V +  ++MG  +E  +++  GN  A++GLD+
Sbjct:  239 LQKLAPLHEAVLDMVVKFIPNPREAQKYRLPKIWHGDLNSEIGKAMLETDPNGPLVMLVND-VRIDPHAGLVATGRVFSGTLRAGEEVWLVNAR---------MKQKVLQVSLYMGPYRELADEIVAGNIAAVLGLDK 366          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 42/148 (28.38%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   16 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 459
            +P S  LL M++ HLPSP  +Q+YRV N++EG ++      +    P+GPL + V+ +      G   A GRV+ G +  G +V ++G +             VQ+  ++ G ++   + VP GN V + G    I      + E ++
Sbjct:  242 VPLSEVLLGMVVEHLPSPKVSQEYRVPNIWEGDIESPAGQGMITTSPDGPLAVMVTNVSVDKHAGE-IATGRVYGGSIEKGTEVYLVGSH---------SKSRVQQVGVYFGPERVNTDAVPAGNIVYVAGAKGAIAGETICSPEDKI 379          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 43/150 (28.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query:   16 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDA 465
            +P    LL M++ HLPSP+ +Q YRV  ++ G L+ +   A+   DP GPL + V+ +      G   A GRV+ G +  G +V ++G +             VQ+  ++MG ++   + VP GN VA+ G    +         +++ A
Sbjct:  242 VPLHQVLLGMVVEHLPSPAESQAYRVPIIWSGDLESEEGQAMLKTDPEGPLAVMVTDVSIDKHAGE-VATGRVYGGAIEKGSEVFLVGSH---------SKARVQQVGVYMGPERVNTDKVPAGNIVAITGAKNAVAGETICDTGRKIKA 381          
The following BLAST results are available for this feature:
BLAST of CF504503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EF2_THEVO2.669e-1435.71Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_METM72.669e-1432.65Elongation factor 2 OS=Methanococcus maripaludis (... [more]
SN114_SCHPO4.553e-1428.99114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_METM65.947e-1432.65Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METPE7.767e-1431.97Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_METTP1.730e-1335.88Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_METM51.730e-1331.97Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_STAMF2.951e-1329.71Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_METS36.575e-1328.38Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
EF2_METTH8.587e-1328.67Elongation factor 2 OS=Methanobacterium thermoauto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-992 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504503 ID=CF504503; Name=CF504503; organism=Citrus sinensis; type=EST; length=472bp
GTCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGAT
CTTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACT
TGTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGT
GATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATC
TGATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAAGGTGT
CAACAGGTTTGAAGGTCAGGATCATGGGTCCAAACTATGTTCCTGGTGAG
AAGAAAGATTTGTATGTTAAGAGCGTCCAAAGGACTGTTATTTGGATGGG
AAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTGGTAACACTGTGGCTA
TGGTTGGTCTCGATCAATTCATCACTAAAAATGCTACCTTGACTAATGAG
AAGGAAGTTGATGCCCATCCCA
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