CF504503

Overview
NameCF504503
Unique NameCF504503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            P +  +L+M+  H P+P  AQ  R+  ++ G  D + A ++R  D +G ++L V+ +      G   A GRVFSG +  G ++ + G     G+ +      VQ   I+MG ++E V++VP GN  A+ GL   I   +T++NE+
Sbjct:  244 PLADVVLDMVAEHFPNPIDAQPRRIPTVWRGDADSEIAESMRLVDEDGEVVLMVTDIGVDPHAGEIAA-GRVFSGTLEKGQELYVSG---TAGKNR------VQSVGIYMGGEREEVDEVPAGNIAAVTGLKDAIA-GSTVSNEE 377          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK 453
            P +  +L+M+  H P+P  AQ  R+  ++ G  D + A ++R  D +G ++L V+ +      G   A GRVFSG +  G ++ + G     G+ +      VQ   I+MG ++E V++VP GN  A+ GL   I   +T++NE+
Sbjct:  244 PLADVVLDMVAEHFPNPIDAQPRRIPTVWRGDADSEIAESMRLVDEDGEVVLMVTDIGVDPHAGEIAA-GRVFSGTLEKGQELYVSG---TAGKNR------VQSVGIYMGGEREEVDEVPAGNIAAVTGLKDAIA-GSTVSNEE 377          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 459
            P    +L+M++ HLP+P  AQ  RV  ++ G    +   A+  CDPNGP  + V+ +      G   A GR+FSG +  G  + +MG       KK+     +Q+  I+MG K+  VE++  GN  A+ GL   I   +T+T+  E+
Sbjct:  243 PLYEVVLDMVVHHLPNPLEAQPRRVNVIWHGDHSTKEGKAMLACDPNGPATMMVTDISFDPHAGE-VATGRLFSGTLRRGDGLYVMG-----SAKKE---NRLQQVGIFMGPKRVEVEEIVAGNIAAVTGLKDAIV-GSTVTSLMEM 379          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 38/138 (27.54%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            +Q   P   A+L+M++ H+P+P  AQ+YR+  ++ G  + +    +   DPNGPL++ ++  I         A GR++SG +  G +V ++    VP        + V +  ++MG  +E  +++  GN  A +GL++
Sbjct:  239 LQKTAPLHEAILDMVVKHIPNPREAQRYRIPKIWHGDPNHEIVKYLMEADPNGPLVMLIND-IRVDPHAGLVATGRIYSGTLRPGEEVWLVNAR-VP--------QRVLQVSLYMGPYRELADEITAGNIAAALGLEK 366          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 38/138 (27.54%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQ 417
            +Q   P   A+L+M++ ++P+P  AQ+YR+  ++ G L+ +    +   DPNGPL++ V+  I         A GR++SG +  G +V ++    VP        + V +  ++MG  +E  +++  GN  A + L++
Sbjct:  237 LQKAAPLHEAILDMVVKYVPNPRDAQRYRIPKIWHGDLNHEAVKYMMEADPNGPLVMLVND-IRVDPHAGLVATGRIYSGTLRAGEEVWLVNAR-VP--------QRVLQVSLYMGPYRELADEITAGNIAAALALEK 364          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNE 450
            P S  +L+M+  H P+P  AQ  RV  ++ G  + Q A+ +R  + +G ++L V+ +      G   A GRVFSG +  G ++ + G     G+ +      +Q   I+MG ++E V+ VP GN  A+ GL   I  +   + E
Sbjct:  244 PLSDVVLDMVCEHFPNPVDAQPMRVPRIWRGDAESQLADDMRLVNEDGEVVLMVTDIGVDPHAGEIAA-GRVFSGTLEKGQELYVSG---TAGKNR------IQSVGIYMGGEREEVDRVPAGNIAAVTGLKDAIAGSTVSSEE 377          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_METMJ (Elongation factor 2 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTN 447
            P  + LL+M++ HLP+P  AQ  R+  ++ G  +     A+  CDPNGP+ + V+ +      G   A GR+FSG +  G +  I+G       K+      + +  I+MG ++  VE +P GN  A+ GL   I   +T+T+
Sbjct:  243 PLHAVLLDMVVKHLPNPLQAQDRRIHIIWHGDYNTPEGKAMVACDPNGPVCMMVTDISFDPHAGE-VATGRLFSGTLRRGTECYIIG-----AAKR---ANRLAQVGIFMGAERIEVEALPAGNIAAVTGLKDAIV-GSTVTS 375          
BLAST of CF504503 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   19 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFI 423
            P S  +L+M+  H P+P  AQ  R+  ++ G  D + A A+   + +G L++ V+ +      G   A GRVFSG +  G  + + G     G  +      VQ   I+MG ++E VE VP GN  A+ GL   I
Sbjct:  245 PLSDVVLDMVCEHFPNPVDAQPRRIPRIWRGDADSEVAEAMELVNEDGELVMMVTDIGIDPHAGEIAA-GRVFSGTIEKGQDLYVSG---TAGTNR------VQSVGIYMGGEREEVERVPAGNIAAVTGLKDAI 369          
The following BLAST results are available for this feature:
BLAST of CF504503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EF2_HALSA1.465e-1231.72Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS31.465e-1231.72Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_METB63.263e-1232.65Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_DESK13.263e-1227.54Elongation factor 2 OS=Desulfurococcus kamchatkens... [more]
EF2_DESMO2.115e-1127.54Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_HALMA3.608e-1130.56Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_METMJ4.712e-1131.47Elongation factor 2 OS=Methanoculleus marisnigri (... [more]
EF2_NATPD6.154e-1132.59Elongation factor 2 OS=Natronomonas pharaonis (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-992 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504503 ID=CF504503; Name=CF504503; organism=Citrus sinensis; type=EST; length=472bp
GTCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGAT
CTTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACT
TGTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGT
GATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATC
TGATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAAGGTGT
CAACAGGTTTGAAGGTCAGGATCATGGGTCCAAACTATGTTCCTGGTGAG
AAGAAAGATTTGTATGTTAAGAGCGTCCAAAGGACTGTTATTTGGATGGG
AAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTGGTAACACTGTGGCTA
TGGTTGGTCTCGATCAATTCATCACTAAAAATGCTACCTTGACTAATGAG
AAGGAAGTTGATGCCCATCCCA
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