CF504508

Overview
NameCF504508
Unique NameCF504508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.366e-27
Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            ++A G+ G++    ++KA +AEF + ++FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L
Sbjct:    3 KLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITIL 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.256e-26
Identity = 57/97 (58.76%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            ++A G+  ++    +LKA +AEF + ++FVFAG GS +A+S+LT GGA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVTFG  VGGHIT+L
Sbjct:    3 KLAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITIL 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.641e-26
Identity = 56/97 (57.73%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            ++A G+ G++    ++KA +AEF + ++FVFAG GS +AF +LT+GGA  PAGL++ ++AHA ALFV VSV AN SGGH+NPAVTFG  VGGHIT+L
Sbjct:    3 KLAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVL 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.799e-26
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            +I +G+ G++    +LKA L+EF + ++FVFAG GS +AF+KLT  GA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  +GG+ITL+
Sbjct:    3 KIEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLI 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            RIA G+ G++    +LKA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L
Sbjct:    3 RIAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITIL 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.370e-25
Identity = 55/97 (56.70%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            +I IG+ G++    +LKA L+EF + ++FVFAG GS +AF+KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT++
Sbjct:    3 KIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVI 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  115 GTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            G   EA+HPD+++A LAEF S  +FVFA +GS ++  KL        G +TP GLI  +LAHAFALF AVS   N+SGGHVNPAVTFGA VGG +T +R
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIR 110          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.042e-25
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            M   R + G   EA+HPD+++A+LAEF S  IFVFAG+GSG+A  K+    A +   L++ +LAHAFALF AVS   ++SGGHVNPAV+FGA +GG I+++R
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIR 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.894e-25
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  106 IAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            IA G+ G++    +LKA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITIL 99          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.176e-24
Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            +IA G+ G++    ++KA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT+L
Sbjct:    3 KIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITIL 99          
The following BLAST results are available for this feature:
BLAST of CF504508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TIP21_ORYSJ7.366e-2757.73Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE1.256e-2658.76Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_MAIZE1.641e-2657.73Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP23_ARATH2.799e-2656.70Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP1_TOBAC1.814e-2557.73Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP22_ARATH2.370e-2556.70Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP31_ARATH3.095e-2556.57Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIPA_PHAVU4.042e-2552.94Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP2_TOBAC6.894e-2557.29Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP_ANTMA1.176e-2454.64Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-997 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504508 ID=CF504508; Name=CF504508; organism=Citrus sinensis; type=EST; length=398bp
AAACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCT
AAAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCT
ACAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTA
AAGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGG
CCAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCA
CGCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTT
GTAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGC
TGTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAG
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