CF504528

Overview
NameCF504528
Unique NameCF504528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504528 vs. ExPASy Swiss-Prot
Match: PIP_MYCGE (Putative proline iminopeptidase OS=Mycoplasma genitalium GN=pip PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 42/97 (43.30%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   19 QRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSQAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRD 309
            QRG GKS  +    +N T  L+ D E LRQ L I  W +FGGSWGS LAL Y+  HP  V  + LR +FL R+K+      G     YP   + F D
Sbjct:   63 QRGCGKSKTNDIFYENNTDKLVSDFEILRQKLNIKNWTLFGGSWGSALALVYAIKHPQVVDKIFLRALFLAREKDWSEALMGLGKMFYPYEHQRFMD 159
[Close]
BLAST of CF504528 vs. ExPASy Swiss-Prot
Match: PIP_STRCO (Probable proline iminopeptidase OS=Streptomyces coelicolor GN=SCO1989 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 45/100 (45.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   19 QRGAGKSTPHAC-----LDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSQAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESF 303
            QRGAG+S P A      +  NTT  L+ D+E+LR HL I  W V+G SWGS L L Y+Q HP  VT LVL G+      E+      G   I+P+A E F
Sbjct:   67 QRGAGRSLPRASAPDTDMSVNTTAHLMADLERLRVHLGIERWLVWGVSWGSVLGLRYAQTHPGVVTELVLTGVATGSNAEVA-LLTRGLGNIFPEAHERF 165
The following BLAST results are available for this feature:
BLAST of CF504528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP_MYCGE6.501e-1543.30Putative proline iminopeptidase OS=Mycoplasma geni... [more]
PIP_STRCO3.226e-1445.00Probable proline iminopeptidase OS=Streptomyces co... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-017 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504528 ID=CF504528; Name=CF504528; organism=Citrus sinensis; type=EST; length=309bp
TTGGGCTGCAGGTTTGCCCAGCGAGGTGCAGGAAAAAGTACCCCTCATGC
TTGCTTGGATCAAAACACCACATGGGATCTCATTGATGACATTGAAAAGT
TGAGACAACACCTAGAAATTCCAGAATGGCAGGTATTTGGTGGATCATGG
GGAAGCACACTTGCTCTTGCATACAGCCAGGCACACCCCGACAAGGTTAC
TGGCTTGGTCCTCAGGGGGATCTTTCTTTTGCGAAAGAAAGAGATTGATT
GGTTTTATGAGGGTGGTGCTGCTGCTATATACCCTGATGCATGGGAGTCA
TTCAGAGAC
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