CF504530

Overview
NameCF504530
Unique NameCF504530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_BOVIN (60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_PARDA (60S ribosomal protein L15 OS=Paramisgurnus dabryanus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.918e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  +PTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRTPKPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.918e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_HYDAT (60S ribosomal protein L15 OS=Hydra attenuata GN=RPL15 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.918e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_CYPCA (60S ribosomal protein L15 OS=Cyprinus carpio GN=rpl15 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.918e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_CARAU (60S ribosomal protein L15 OS=Carassius auratus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.918e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_SINKN (60S ribosomal protein L15 OS=Siniperca kneri GN=rpl15 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.423e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQ 57
The following BLAST results are available for this feature:
BLAST of CF504530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL15_MOUSE2.883e-1873.2160S ribosomal protein L15 OS=Mus musculus GN=Rpl15... [more]
RL15_MACFA2.883e-1873.2160S ribosomal protein L15 OS=Macaca fascicularis G... [more]
RL15_HUMAN2.883e-1873.2160S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]
RL15_BOVIN2.883e-1873.2160S ribosomal protein L15 OS=Bos taurus GN=RPL15 P... [more]
RL15_PARDA4.918e-1873.2160S ribosomal protein L15 OS=Paramisgurnus dabryan... [more]
RL15_ICTPU4.918e-1873.2160S ribosomal protein L15 OS=Ictalurus punctatus G... [more]
RL15_HYDAT4.918e-1873.2160S ribosomal protein L15 OS=Hydra attenuata GN=RP... [more]
RL15_CYPCA4.918e-1873.2160S ribosomal protein L15 OS=Cyprinus carpio GN=rp... [more]
RL15_CARAU4.918e-1873.2160S ribosomal protein L15 OS=Carassius auratus GN=... [more]
RL15_SINKN6.423e-1873.2160S ribosomal protein L15 OS=Siniperca kneri GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-019 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504530 ID=CF504530; Name=CF504530; organism=Citrus sinensis; type=EST; length=226bp
AAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAGCTCAGCTCATAG
CCAATGGGGGCTTACACCGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGG
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