CF504542

Overview
NameCF504542
Unique NameCF504542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS4_BROFI (Chalcone synthase 4 OS=Bromheadia finlaysoniana GN=CHS4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.530e-14
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLK
Sbjct:  229 PDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLK 270
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS3_BROFI (Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.530e-14
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLK
Sbjct:  229 PDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLK 270
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.222e-14
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VERPL+QLVS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PVVGVERPLFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.222e-14
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD SVERPL+++VS +QTILPDS+GAIDGHL+EVGLTFHLLK
Sbjct:  234 PDLSVERPLFEMVSAAQTILPDSEGAIDGHLKEVGLTFHLLK 275
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.222e-14
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD  VERPL+QLVS SQ ILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  232 PDERVERPLFQLVSASQRILPDSEGAIDGHLREVGLTFHLLK 273
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.432e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDT +E PL++LVS +QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PDTKIELPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.232e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD  +ERPL+QLVS +QTILPDS GAIDGHLREVGLTFHLLK
Sbjct:  228 PDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.232e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD  +ERPL+QLVS +QTILPDS GAIDGHLREVGLTFHLLK
Sbjct:  228 PDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.232e-13
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD  VE PL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  232 PDKRVECPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLK 273
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.609e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD  VERPL+QLVS +QTILPDS+GAIDGHLREVGL FHLLK
Sbjct:  231 PDGRVERPLFQLVSAAQTILPDSEGAIDGHLREVGLAFHLLK 272
The following BLAST results are available for this feature:
BLAST of CF504542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CHS4_BROFI5.530e-1480.95Chalcone synthase 4 OS=Bromheadia finlaysoniana GN... [more]
CHS3_BROFI5.530e-1480.95Chalcone synthase 3 OS=Bromheadia finlaysoniana GN... [more]
CHSY_PERFR7.222e-1485.71Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHS3_GERHY7.222e-1480.95Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS1_SORBI7.222e-1485.71Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]
CHSY_VITVI9.432e-1480.95Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHSE_IPOPU1.232e-1383.33Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSE_IPONI1.232e-1383.33Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHS7_SORBI1.232e-1385.71Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS1_MAIZE1.609e-1383.33Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-031 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504542 ID=CF504542; Name=CF504542; organism=Citrus sinensis; type=EST; length=172bp
CTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGAC
ACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGAT
CCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTC
TCACTTTCCATTTGCTTAAAGA
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