CF504542

Overview
NameCF504542
Unique NameCF504542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3
Query:   45 PDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  232 PDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLK 274          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3
Query:   45 PDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  233 PDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLK 275          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3
Query:   45 PDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  233 PDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLK 275          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3
Query:   45 PDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  229 PDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLK 271          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3
Query:   45 PDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  233 PDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLK 275          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD + ERPL+++VS +QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 PDLTTERPLFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLK 272          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_DIACA (Chalcone synthase OS=Dianthus caryophyllus GN=CHS PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.744e-13
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD S+ERPL+Q+    QT+LPDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PDLSIERPLFQMAWAGQTLLPDSDGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.744e-13
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD + ERPL++++S +QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 PDLTTERPLFEMISAAQTILPDSEGAIDGHLREVGLTFHLLK 272          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_CAMSI (Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.681e-13
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+PL++LVS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.681e-13
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+PL++LVS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLK 269          
The following BLAST results are available for this feature:
BLAST of CF504542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CHSY_MATIN2.101e-1381.40Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHSY_CARAN2.101e-1381.40Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHSY_ARATH2.101e-1381.40Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSY_ARAAL2.101e-1381.40Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHS3_SINAL2.101e-1381.40Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHS1_GERHY2.101e-1378.57Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHSY_DIACA2.744e-1378.57Chalcone synthase OS=Dianthus caryophyllus GN=CHS ... [more]
CHSY_CALCH2.744e-1376.19Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS2_CAMSI4.681e-1380.95Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 P... [more]
CHS1_CAMSI4.681e-1380.95Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-031 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504542 ID=CF504542; Name=CF504542; organism=Citrus sinensis; type=EST; length=172bp
CTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGAC
ACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGAT
CCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTC
TCACTTTCCATTTGCTTAAAGA
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