CF504542

Overview
NameCF504542
Unique NameCF504542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_PERAE (Chalcone synthase OS=Persea americana GN=CHS PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.779e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE P+++LVS  QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  229 PVPGVENPMFELVSAGQTILPDSDGAIDGHLREVGLTFHLLK 270          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.779e-12
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+P+++LVST+QTILPDSDG+IDGHLRE GLTFHLLK
Sbjct:  227 PIPEIEKPMFELVSTAQTILPDSDGSIDGHLREAGLTFHLLK 268          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VERPL++LVS +QT+LPDS GAIDGHLREVGLTFHLLK
Sbjct:  228 PIPGVERPLFELVSAAQTLLPDSHGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3
Query:   57 VERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            VE+PL+QLV T+QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 VEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLK 268          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+PL++LVS +QTILP SDGAIDGHLREVGLTFHLLK
Sbjct:  228 PIPEVEKPLFELVSAAQTILPSSDGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3
Query:   57 VERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            VE+PL+QLV T+QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 VEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLK 268          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3
Query:   57 VERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            VE+PL+QLV T+QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 VEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLK 268          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLK 269          
The following BLAST results are available for this feature:
BLAST of CF504542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CHSY_PERAE1.779e-1278.57Chalcone synthase OS=Persea americana GN=CHS PE=2 ... [more]
CHS1_CITSI1.779e-1273.81Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHSB_SOLTU2.323e-1276.19Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHSA_SOLTU2.323e-1276.19Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHSA_PETHY2.323e-1278.57Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]
CHS5_SOYBN2.323e-1286.84Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS3_CAMSI2.323e-1278.57Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHS2_SOYBN2.323e-1286.84Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHS1_SOYBN2.323e-1286.84Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]
CHS1_SOLLC2.323e-1276.19Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-031 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504542 ID=CF504542; Name=CF504542; organism=Citrus sinensis; type=EST; length=172bp
CTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGAC
ACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGAT
CCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTC
TCACTTTCCATTTGCTTAAAGA
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