CF504542

Overview
NameCF504542
Unique NameCF504542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_PUELO (Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.034e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+PLY+LV T+QTI PDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PIPQVEKPLYELVWTAQTIAPDSEGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.034e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +ERPL++LVS +QT+LPDS GAIDGHLREVGLTFHLLK
Sbjct:  228 PIPEIERPLFELVSAAQTLLPDSHGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.034e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VERPL+Q+V+ +QT+LPDS GAIDGHLREVGLTFHLLK
Sbjct:  228 PVVGVERPLFQIVTAAQTLLPDSHGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSB_PEA (Chalcone synthase 1B OS=Pisum sativum GN=CHS-1B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.034e-12
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+PL++LV T+QTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PLPQVEKPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.034e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+PLY+LV T+QTI PDS+GAIDGHLREVGLTFHLLK
Sbjct:  228 PIPQVEKPLYELVWTAQTIAPDSEGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.963e-12
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 3
Query:   45 PDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD S  E+P++++VS +QTILPDSDGAIDGHLREVG+TFHLLK
Sbjct:  232 PDVSAGEKPIFEMVSAAQTILPDSDGAIDGHLREVGITFHLLK 274          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_PHAVU (Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.963e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+PL++LV T+QTI PDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PIPQIEKPLFELVWTAQTIAPDSDGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.759e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+P ++L+ T+QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  233 PVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLK 274          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS7_PICMA (Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.759e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   VE+P ++L+ T+QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  233 PIPQVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLK 274          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.828e-12
Identity = 30/37 (81.08%), Postives = 36/37 (97.30%), Query Frame = 3
Query:   60 ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  239 EKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLK 275          
The following BLAST results are available for this feature:
BLAST of CF504542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CHSY_PUELO3.034e-1278.57Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 S... [more]
CHSY_CATRO3.034e-1276.19Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
CHSY_ANTMA3.034e-1276.19Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHSB_PEA3.034e-1278.57Chalcone synthase 1B OS=Pisum sativum GN=CHS-1B PE... [more]
CHS7_SOYBN3.034e-1278.57Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]
CHSY_RAPSA3.963e-1274.42Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHSY_PHAVU3.963e-1276.19Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS1... [more]
CHSY_PINSY6.759e-1276.19Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHS7_PICMA6.759e-1276.19Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 ... [more]
CHS1_SINAL8.828e-1281.08Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-031 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504542 ID=CF504542; Name=CF504542; organism=Citrus sinensis; type=EST; length=172bp
CTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGAC
ACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGAT
CCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTC
TCACTTTCCATTTGCTTAAAGA
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