CF504542

Overview
NameCF504542
Unique NameCF504542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:691..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLK
Sbjct:  228 PVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLK
Sbjct:  228 PVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLK
Sbjct:  228 PVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLK
Sbjct:  228 PVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_CICAR (Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLK
Sbjct:  228 PIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: ACS4_RUTGR (Probable acridone synthase 4 OS=Ruta graveolens GN=ACS4 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD+S+ER LY LVS SQ +LPDSDGAI+GH+RE GLT HL K
Sbjct:  228 PDSSIERALYYLVSASQMLLPDSDGAIEGHIREEGLTVHLKK 269
[Close]
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: ACS3_RUTGR (Probable acridone synthase 3 OS=Ruta graveolens GN=ACS3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD+S+ER LY LVS SQ +LPDSDGAI+GH+RE GLT HL K
Sbjct:  228 PDSSIERALYYLVSASQMLLPDSDGAIEGHIREEGLTVHLKK 269
The following BLAST results are available for this feature:
BLAST of CF504542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CHS2_TRISU9.761e-1166.67Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS2_PEA9.761e-1166.67Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHS2_MEDSA9.761e-1166.67Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHS1_TRISU9.761e-1166.67Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS1_CICAR9.761e-1166.67Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=... [more]
ACS4_RUTGR9.761e-1171.43Probable acridone synthase 4 OS=Ruta graveolens GN... [more]
ACS3_RUTGR9.761e-1171.43Probable acridone synthase 3 OS=Ruta graveolens GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-031 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504542 ID=CF504542; Name=CF504542; organism=Citrus sinensis; type=EST; length=172bp
CTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGAC
ACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGAT
CCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTC
TCACTTTCCATTTGCTTAAAGA
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