CF504544 | Citrus Genome Database

Overview


Name	CF504544
Unique Name	CF504544
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	299

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig821	contig	Csv1_Contig821:139..437.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_MYRRU (Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_MOUSE (Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_MACFA (Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_LITVA (Histone H4 OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_HUMAN (Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_DROYA (Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_DROTE (Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_DROSI (Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_DROSE (Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

[Close]

BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_DROOR (Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.037e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

The following BLAST results are available for this feature:

BLAST of CF504544 vs. ExPASy Swiss-Prot

BLAST of CF504544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_MYRRU	5.037e-23	98.15	Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2	[more]
H4_MOUSE	5.037e-23	98.15	Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2	[more]
H4_MACFA	5.037e-23	98.15	Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE...	[more]
H4_LITVA	5.037e-23	98.15	Histone H4 OS=Litopenaeus vannamei PE=1 SV=2	[more]
H4_HUMAN	5.037e-23	98.15	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	[more]
H4_DROYA	5.037e-23	98.15	Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2	[more]
H4_DROTE	5.037e-23	98.15	Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV...	[more]
H4_DROSI	5.037e-23	98.15	Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=...	[more]
H4_DROSE	5.037e-23	98.15	Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV...	[more]
H4_DROOR	5.037e-23	98.15	Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-033 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504544 ID=CF504544; Name=CF504544; organism=Citrus sinensis; type=EST; length=299bp
GGCACATTCAAATTTCTCTATCCAAATTCTCTTTCAAGGAACAGCGGAAA
GTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGG
GATTGGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAAC
ATTCAGGGTATCACAAAGCCAGCAATCCGGCGTTTGGCTCGTAGAGGTGG
AGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGACACGTGGCGTCCTGA
AGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCA