CF504544

Overview
NameCF504544
Unique NameCF504544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:139..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY E
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY E
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY E
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY E
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_MORAP (Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.265e-22
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.265e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTE
Sbjct:   22 VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.569e-22
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+F +NVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_ASCSU (Histone H4 OS=Ascaris suum PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTY E
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYCE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_USTMA (Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 1.620e-21
Identity = 49/54 (90.74%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRISGLIY+ETRGVLK+FLE+VIRD+VTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYDETRGVLKLFLESVIRDSVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_EIMTE (Histone H4 OS=Eimeria tenella PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.620e-21
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEE RGVLK+FLEN+I+D+VTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEEIRGVLKVFLENIIKDSVTYTE 75
The following BLAST results are available for this feature:
BLAST of CF504544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PARLI2.500e-2296.30Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI2.500e-2296.30Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU2.500e-2296.30Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL2.500e-2296.30Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_MORAP3.265e-2294.44Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3[more]
H4_APIME3.265e-2296.30Histone H4 OS=Apis mellifera PE=3 SV=3[more]
H4_DIAPU5.569e-2294.44Histone H4 OS=Diadromus pulchellus PE=3 SV=3[more]
H4_ASCSU1.241e-2194.44Histone H4 OS=Ascaris suum PE=3 SV=2[more]
H4_USTMA1.620e-2190.74Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4[more]
H4_EIMTE1.620e-2190.74Histone H4 OS=Eimeria tenella PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-033 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504544 ID=CF504544; Name=CF504544; organism=Citrus sinensis; type=EST; length=299bp
GGCACATTCAAATTTCTCTATCCAAATTCTCTTTCAAGGAACAGCGGAAA
GTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGG
GATTGGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAAC
ATTCAGGGTATCACAAAGCCAGCAATCCGGCGTTTGGCTCGTAGAGGTGG
AGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGACACGTGGCGTCCTGA
AGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCA
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