CF504548

Overview
NameCF504548
Unique NameCF504548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER59_ARATH (Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.059e-25
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   19 VMAYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            VM    +  V  +    +   + LSP  Y K CP  +  +++ V  A++ E RM ASL+RLHFHDCFV GCDAS+LLD     DSEK AIPN NS RGFEVID IK  V+  C   VVSCADIL +A
Sbjct:    7 VMGGHVLLTVFTLCMLCSGVRAQLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA---DSEKLAIPNINSARGFEVIDTIKAAVENACP-GVVSCADILTLA 129          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.059e-25
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   55 ILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            ++  A+ + + L+P +YD+ CP     ++  +   +  + R+ AS+LRLHFHDCFV GCDASILLD+T++  +EK+A  N NS RGF VID++K  V++ C R  VSCAD+L +A
Sbjct:   21 LMLHASLSAAQLTPTFYDRSCPNVTNIVRETIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVERACPR-TVSCADMLTIA 134          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.059e-25
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   34 GIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            G   V  +L  A+ + + L P +Y + CP     I   +   +  + R+ ASLLRLHFHDCFV+GCDASILLD++++  +EK+A PN NSVRGF+VID++K  +++ C R  VSCADI+ +A
Sbjct:   13 GALIVGCLLLQASNSNAQLRPDFYFRTCPPIFNIIGDTIVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNSVRGFDVIDRMKAAIERACPR-TVSCADIITIA 133          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.384e-25
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   88 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            L P +Y + CP     IK ++   ++ + R+ AS+LRLHFHDCFV+GCDASILLD + +  +EK+A PN NS RGF VID++K  +++ C R  VSCADIL +A
Sbjct:    2 LRPDFYSRTCPSVFNIIKNVIVDELQTDPRIAASILRLHFHDCFVRGCDASILLDTSKSFRTEKDAAPNVNSARGFNVIDRMKTALERACPR-TVSCADILTIA 104          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER42_MAIZE (Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.360e-25
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   46 VVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPN-NNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            VV     A+TA + LS  +YD  CP A+ TI   V +AV ++ R+GASLLRLHFHDCF+QGCDASILL+DTS    E+   PN   + R F+V++ IK +V+  C   VVSCADILAVA
Sbjct:   17 VVAAALSASTASAQLSSTFYDTSCPSAMSTISSGVNSAVAQQARVGASLLRLHFHDCFIQGCDASILLNDTS---GEQTQPPNLTLNPRAFDVVNSIKAQVEAACP-GVVSCADILAVA 131          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.360e-25
Identity = 54/118 (45.76%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   46 VVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            +V ++  A+ + + L+P +YD  CP     ++  +   +  + R+ AS+LRLHFHDCFV GCDASILLD+T++  +EK+A  N NS RGF VID++K  V+  C R  VSCAD+L +A
Sbjct:   18 LVCLILHASLSDAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIA 134          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER10_ARATH (Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.360e-25
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   82 STLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            S L+  +YD+ CP     +K  V  A + + R+ ASLLRLHFHDCFV GCD SILL+D+     EKNA PN NSVRGFEVI+ IK +++  C    VSCADI+A+A
Sbjct:   46 SNLNYRFYDRSCPRLQTIVKSGVWRAFKDDSRIAASLLRLHFHDCFVNGCDGSILLNDSEDFKGEKNAQPNRNSVRGFEVIEDIKSDIESSCPL-TVSCADIVALA 150          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.083e-25
Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   67 AATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAV 396
            + ++ ++LSP +Y+  CP A   ++  V  A   + RM AS+LRLHFHDCFV GCDAS+LLD + T++SEK +  N +S RGFEVID+IK  ++  C    VSCAD+LA+
Sbjct:   34 STSSVASLSPQFYENSCPNAQAIVQSYVANAYFNDPRMAASILRLHFHDCFVNGCDASVLLDSSGTMESEKRSNANRDSARGFEVIDEIKSALENECPE-TVSCADLLAL 142          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.083e-25
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   64 FAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            +A+ + + L+P +YD  CP     ++ I+   +  + R+ AS+LRLHFHDCFV GCDASILLD+T++  +EK+A+ N NS RGF  +D+IK  V++ C R  VSCAD+L +A
Sbjct:   22 YASLSDAQLTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASILLDNTTSFLTEKDALGNANSARGFPTVDRIKAAVERACPR-TVSCADVLTIA 132          
BLAST of CF504548 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.026e-25
Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   55 ILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDQIKKEVDKVCKRPVVSCADILAVA 399
            +L  A+ + + L P +Y + CP     I  I+   +  + R+ ASLLRLHFHDCFV+GCDASILLD++++  +EK+A PN NS RGF VID++K  +++ C R  VSCAD+L +A
Sbjct:   20 LLLQASNSNAQLRPDFYFRTCPSVFNIIGDIIVDELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGFGVIDRMKTSLERACPR-TVSCADVLTIA 133          
The following BLAST results are available for this feature:
BLAST of CF504548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PER59_ARATH1.059e-2551.18Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=... [more]
PER34_ARATH1.059e-2546.09Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER23_ARATH1.059e-2546.72Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PERE5_ARMRU1.384e-2550.96Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER42_MAIZE2.360e-2553.78Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1[more]
PER1A_ARMRU2.360e-2545.76Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER10_ARATH2.360e-2553.77Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=... [more]
PER36_ARATH3.083e-2549.09Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER1B_ARMRU3.083e-2547.32Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER3_ARMRU4.026e-2547.83Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-037 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504548 ID=CF504548; Name=CF504548; organism=Citrus sinensis; type=EST; length=399bp
ACTAATTAGTGCAAATTAGTCATGGCTTATAGAGGCATATTTCATGTCGT
TCTCATTTTGGCTTTTGCAGCTACAGCTTTCTCAACCCTTTCTCCTTGCT
ACTATGATAAAGTTTGTCCCGAAGCTTTGCCAACAATCAAACGAATAGTT
GAAGCCGCTGTGGAAAAAGAAGGCCGCATGGGTGCTTCCTTACTTCGTCT
CCACTTCCATGATTGTTTTGTTCAAGGTTGTGATGCCTCCATTCTTCTTG
ATGACACGTCCACCATTGATAGTGAAAAGAATGCAATTCCAAATAATAAT
TCCGTTAGAGGATTCGAGGTCATCGACCAGATAAAGAAAGAGGTCGACAA
AGTTTGCAAACGCCCAGTTGTTTCTTGTGCAGATATCTTGGCTGTAGCA
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