CF504561

Overview
NameCF504561
Unique NameCF504561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX1_MEDTR (Auxin transporter-like protein 1 OS=Medicago truncatula GN=LAX1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.340e-36
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP  +V YFTGATNILYTFGGHAVTVEIMHAMWKPQKFK+IY  ATLYVFTLT+PSA AVYWAFGDQLL HSNAFSLL
Sbjct:  223 VVHSGPKKMVWYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYFFATLYVFTLTLPSAIAVYWAFGDQLLDHSNAFSLL 304          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX3_ORYSJ (Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica GN=Os10g0147400 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.652e-36
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP+++VLYFTGATNILYTFGGHAVTVEIMHAMW+PQKFK+IYLLAT+YV TLT+PSA+A YWAFGD LLTHSNA +LL
Sbjct:  239 VAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVYVLTLTLPSASAAYWAFGDALLTHSNALALL 320          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX4_ORYSJ (Putative auxin transporter-like protein 4 OS=Oryza sativa subsp. japonica GN=Os11g0169200 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.416e-32
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 3
Query:   12 SGPS-TLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            +GPS T+VLYFTGATNILYTFGGHAVTVEIMHAMW+P++FK IYL AT YV TLT+PSAAA+YWAFGD LL HSNAF+LL
Sbjct:  235 AGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTLPSAAAMYWAFGDALLDHSNAFALL 314          
The following BLAST results are available for this feature:
BLAST of CF504561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX1_MEDTR1.340e-3686.59Auxin transporter-like protein 1 OS=Medicago trunc... [more]
LAX3_ORYSJ6.652e-3682.93Auxin transporter-like protein 3 OS=Oryza sativa s... [more]
LAX4_ORYSJ3.416e-3281.25Putative auxin transporter-like protein 4 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-050 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504561 ID=CF504561; Name=CF504561; organism=Citrus sinensis; type=EST; length=252bp
GTGTGACTCACTCAGGCCCAAGCACGTTGGTTTTGTACTTCACCGGCGCC
ACCAATATACTCTATACTTTTGGCGGACATGCAGTGACTGTAGAAATTAT
GCATGCTATGTGGAAGCCACAGAAATTCAAGTCCATATATCTTCTTGCCA
CCCTGTATGTGTTCACTCTAACCATTCCTTCTGCTGCCGCTGTTTACTGG
GCTTTTGGTGATCAACTCCTCACACATTCAAATGCCTTCTCACTGCTTTC
CA
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