CF504562

Overview
NameCF504562
Unique NameCF504562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:57..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.450e-30
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            EQTFIMIKPDGVQRGLVGEII RFEKKGF LKGLK + V+R FAEKHY DLS+KPFF  L++YI SGPVVAMIWEG+
Sbjct:    3 EQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGK 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.458e-30
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME TFIMIKPDGVQRGL+GEII RFEKKGF LK LKL+ V+R FAEKHY DLSSKPFF  L++YI SGPVVAM+WEG+
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.035e-29
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.035e-29
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.109e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:   64 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            +++E+E+T+IMIKPDGVQRGLVGEII RFEKKGF L GLKL    +  AE+HY+DL SKPFF  LI+YITSGPVV M WEG G
Sbjct:   80 SMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVG 162          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.377e-27
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TFI IKPDGVQRGLVG+II RFE KGF+L GLK+MTV +  AEKHY+    +PFF SLIE+I SGP+VAM+WEGEG
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLIEFIKSGPLVAMVWEGEG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.377e-27
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TFIMIKPDGVQRGLVGE+I RFE KGF+L GLKLM+V +  AE+HY+    +PFFGSL+E+I S PVVAM+WEG+G
Sbjct:    1 MERTFIMIKPDGVQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLVEFICSSPVVAMVWEGDG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.635e-27
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1
Query:   64 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            +++++E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+    +  AE+HY+DLS+K FF +LIEYITSGPVV M WEG G
Sbjct:   79 SMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG 161          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.146e-26
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    4 ILSHVCCAISLNSQNKLVSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            +L+    A  L  Q  L +    EME+TFI IKPDGVQRGL+ EII RFE+KG+ L G+K+M   + FA+KHY DL  +PFF  L  +++SGPVVAM+WEGEG
Sbjct:   67 LLALPAAAFMLQDQEALAA----EMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEG 165          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.803e-26
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TF+ +KPDGVQRGLVGEII R+E KGF+L GLKLM V R  AE+HY +   KPFF  L+++ITSGPVVAM+WEG+G
Sbjct:    1 MERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKG 79          
The following BLAST results are available for this feature:
BLAST of CF504562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_PEA2.450e-3080.52Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_SACOF5.458e-3078.21Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_ORYSJ6.035e-2973.08Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI6.035e-2973.08Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK2_TOBAC5.109e-2869.88Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_TRIEI7.377e-2770.89Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK_CYAA57.377e-2769.62Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK2_ARATH9.635e-2765.06Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK4_ARATH2.146e-2654.37Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK_ACAM12.803e-2667.09Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-051 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504562 ID=CF504562; Name=CF504562; organism=Citrus sinensis; type=EST; length=312bp
CTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACAA
GTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCA
AGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTT
GAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCG
CCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTG
GTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGG
GAGGGTGAAGGT
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