CF504562

Overview
NameCF504562
Unique NameCF504562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:57..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.441e-23
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFIM+KPDGVQRGLVG+II RFE+KGF L  LK     +   EKHY DLS++PFF  L+ Y+ SGPVV M+WEG
Sbjct:    3 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEG 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 8.441e-23
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFIM+KPDGVQRGLVG+II RFE+KGF L  LK     +   EKHY DLS++PFF  L+ Y+ SGPVV M+WEG
Sbjct:    6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.102e-22
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L  LK +   R  AE+HY     +PFF  L+++ITSGPV+AMIWEGEG
Sbjct:    4 ERTFLAIKPDGVQRGLVGEILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLVDFITSGPVIAMIWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.102e-22
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   R  A +HY     +PFF  L+++ITSGPVVAM+WEG+G
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.102e-22
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            EQTFI IKPDGVQRGLVG II RFE +GF L  +KL +  R   E+HY DL  KPFF  L+ Y+ SGP+VAM+WEG+
Sbjct:    4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEGK 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.440e-22
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF  L+++ITSGPVVAM+W+G+G
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEG
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEG
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEG
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEG 80          
The following BLAST results are available for this feature:
BLAST of CF504562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA_DROYA8.441e-2363.16Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME8.441e-2363.16Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDK_PROM41.102e-2262.82Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM31.102e-2260.76Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_EMENI1.102e-2262.34Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDK_SYNJA1.440e-2260.76Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROM91.880e-2262.82Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM21.880e-2262.82Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM01.880e-2262.82Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKA_MOUSE1.880e-2263.16Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-051 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504562 ID=CF504562; Name=CF504562; organism=Citrus sinensis; type=EST; length=312bp
CTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACAA
GTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCA
AGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTT
GAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCG
CCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTG
GTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGG
GAGGGTGAAGGT
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