CF504562

Overview
NameCF504562
Unique NameCF504562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:57..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.207e-22
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            E+TFI IKPDGVQRG V EI+ RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEG
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.207e-22
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TFIM+KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.207e-22
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TFIM+KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.189e-22
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEG
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.189e-22
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEG
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.189e-22
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TF+MIKPDGV RGL+GEI+ R E KG  + G KLMTV    A+ HY + S KPFFG L+E+ITSGPV AM+ EG+
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGD 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.471e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   67 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PYRFU (Nucleoside diphosphate kinase OS=Pyrococcus furiosus GN=ndk PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.145e-22
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   67 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            + E+E+T ++IKPD V RGL+GEII RFEKKG  + G+K++ +DR  AEKHYE+   KPFF +LI+YIT  PVV M+ EG
Sbjct:    1 MNEVERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHKGKPFFEALIDYITKAPVVVMVVEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TF+M+KPDGVQRGLVGE+I R E+KG  +  +K++ + R  AE HY +   KPFF +L++YITSGPVVAM+ EG+
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGK 78          
The following BLAST results are available for this feature:
BLAST of CF504562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA_RAT2.456e-2263.16Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_PROMS3.207e-2261.54Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_DESHY3.207e-2261.54Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD3.207e-2261.54Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_SYNP64.189e-2263.29Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE74.189e-2263.29Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDK_MACCJ4.189e-2261.54Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDKB_PONAB5.471e-2257.50Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDK_PYRFU7.145e-2257.50Nucleoside diphosphate kinase OS=Pyrococcus furios... [more]
NDK_ARCFU9.332e-2257.69Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-051 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504562 ID=CF504562; Name=CF504562; organism=Citrus sinensis; type=EST; length=312bp
CTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACAA
GTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCA
AGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTT
GAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCG
CCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTG
GTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGG
GAGGGTGAAGGT
back to top