CF504562

Overview
NameCF504562
Unique NameCF504562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:57..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   67 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   67 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   67 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA1_BOVIN (Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFI IKPDGVQRGL+GEII RFE+KGF L  +K M       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_STAHJ (Nucleoside diphosphate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.219e-21
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TF+MIKPD +QR LVGEII R E+KG  L G KLMTV +  AE+HY + + KPF+G LI +ITS PV AM+ EGE
Sbjct:    1 MERTFLMIKPDAIQRNLVGEIISRIERKGLKLVGAKLMTVPQALAEEHYSEHTDKPFYGKLISFITSAPVFAMVVEGE 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.219e-21
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            MEQTF+M+KPDGV+RGL+GEII R E+KGF ++ +K+M V    A+ HY + + KPFFG L+ ++TSGPVVA+  EGE
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGE 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.592e-21
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFI IKPDGVQRGLVGEII RFE+KGF L G+K +       ++HY DL  +PF+  L++Y+ SGP+VAM+WEG
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLVKYMNSGPIVAMVWEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.592e-21
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            EQTFI IKPDGVQRGL+G II RFE +GF L  +KL++  +   E+HY DLS KPFF  L+ Y+ SGP+ AM+WEG
Sbjct:    4 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.592e-21
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA2_BOVIN (Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.592e-21
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG 306
            E+TFI IKPDGVQRGL+GEII RFE+KGF L  +K M       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG
Sbjct:    5 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEG 80          
The following BLAST results are available for this feature:
BLAST of CF504562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_RAT9.332e-2257.50Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKB_MOUSE9.332e-2257.50Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]
NDKB_HUMAN9.332e-2257.50Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDKA1_BOVIN9.332e-2260.53Nucleoside diphosphate kinase A 1 OS=Bos taurus GN... [more]
NDK_STAHJ1.219e-2161.54Nucleoside diphosphate kinase OS=Staphylococcus ha... [more]
NDK_EXIS21.219e-2157.69Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_COLLI1.592e-2159.21Nucleoside diphosphate kinase OS=Columba livia PE=... [more]
NDK_ASPFU1.592e-2160.53Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDKB_BOVIN1.592e-2160.53Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDKA2_BOVIN1.592e-2160.53Nucleoside diphosphate kinase A 2 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-051 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504562 ID=CF504562; Name=CF504562; organism=Citrus sinensis; type=EST; length=312bp
CTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACAA
GTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCA
AGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTT
GAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCG
CCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTG
GTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGG
GAGGGTGAAGGT
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