CF504563

Overview
NameCF504563
Unique NameCF504563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:9..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.902e-47
Identity = 95/138 (68.84%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G ++K          LVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA E
Sbjct:   13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASE 150

HSP 2 Score: 109.383 bits (272), Expect = 9.399e-24
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 7.902e-47
Identity = 95/138 (68.84%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G ++K          LVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA E
Sbjct:   13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASE 150

HSP 2 Score: 109.383 bits (272), Expect = 9.399e-24
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.676e-37
Identity = 74/106 (69.81%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDS 474
            R+KAST   P    L+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP GT ARV IGQ++ S+R +D+
Sbjct:   38 RKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDN 143

HSP 2 Score: 90.5077 bits (223), Expect = 4.518e-18
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPY KSR+CRGVPD KIRI+D+G KK   DEFP CVH
Sbjct:    1 MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.817e-36
Identity = 78/138 (56.52%), Postives = 91/138 (65.94%), Query Frame = 1 
Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     F    P P+      G ++      P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV +GQV++S+R K  N  H  E
Sbjct:    8 KNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVE 145

HSP 2 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:   63 RCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            RCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  VDEFP C H
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGH 46
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
The following BLAST results are available for this feature:
BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL102_ORYSJ7.902e-4768.8460S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI7.902e-4768.8460S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL10_DICDI5.676e-3769.8160S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_CHICK2.817e-3656.5260S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10_SHEEP3.679e-3668.1460S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_RAT3.679e-3668.1460S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PONAB3.679e-3668.1460S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_PIG3.679e-3668.1460S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_PAPAN3.679e-3668.1460S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE3.679e-3668.1460S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bp
GAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGA
AGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAA
GTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATG
TCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGC
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