CF504563

Overview
NameCF504563
Unique NameCF504563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:9..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPAR YR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARRYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.275e-36
Identity = 76/130 (58.46%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD 471
            +  P     F    P P+      G ++      P    LVS E E +SSEALEA RI CNKY+ KY GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D
Sbjct:   13 KNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSD 142

HSP 2 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  V++FP CVH
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.196e-36
Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE 150

HSP 2 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 8.196e-36
Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  160 RRKASTSS-PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            R+KA     P    +VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  E
Sbjct:   38 RKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIE 150

HSP 2 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP   H
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.068e-35
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:  154 G*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            G +R    + P+   ++S E+E++SSEALEAARI  NKYM K  GKD FHLRVR HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG  ARV IG +L S+R K+ N  HA E
Sbjct:   37 GNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIE 150

HSP 2 Score: 94.3597 bits (233), Expect = 3.129e-19
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+D+G K+  VD FP CVH
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVH 51
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.312e-35
Identity = 76/130 (58.46%), Postives = 87/130 (66.92%), Query Frame = 1 
Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD 471
            +  P     F    P P+      G +R      P    LVS E E +SSEALEA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D
Sbjct:   13 KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSD 142

HSP 2 Score: 97.8265 bits (242), Expect = 2.830e-20
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G K+  VD+FP CVH
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVH 51
The following BLAST results are available for this feature:
BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_MACFA3.679e-3668.1460S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN3.679e-3668.1460S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_BOVIN3.679e-3668.1460S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10L_MOUSE3.679e-3668.1460S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10L_BOVIN3.679e-3668.1460S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10_DROME6.275e-3658.4660S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10L_MACFA8.196e-3667.2660S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10L_HUMAN8.196e-3667.2660S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CAEEL4.068e-3564.9160S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_BOMMA5.312e-3558.4660S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bp
GAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGA
AGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAA
GTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATG
TCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGC
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