CF504563

Overview
NameCF504563
Unique NameCF504563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.890e-26
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query:  172 STSSPSAFT----LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            S ++ +AFT    LV+ E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H +E
Sbjct:   40 SAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKE 151          

HSP 2 Score: 40.4318 bits (93), Expect = 6.890e-26
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RPARCYR+IK  PY +  +  G P  +I  +D+G
Sbjct:    1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMG 37          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.382e-25
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  169 ASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            A  + P    L+  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +E
Sbjct:   43 ARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKE 151          

HSP 2 Score: 39.6614 bits (91), Expect = 7.382e-25
Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 3
Query:   54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            RPARCYR+IK  PY +  +  G P  +I  +D+G
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMG 37          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.611e-25
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  172 STSSPSAFT----LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            S ++ +AFT    LV  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +E
Sbjct:   40 SAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKE 151          

HSP 2 Score: 38.5058 bits (88), Expect = 9.611e-25
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:   54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            RPARCY++IK  PY +  +  G P  +I  +D+G
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMG 37          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.668e-24
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  169 ASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            A  + P    LV  E+  +  +ALEAAR    KY++KY G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +E
Sbjct:   43 ARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKE 151          

HSP 2 Score: 38.5058 bits (88), Expect = 4.668e-24
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:   54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            RPARCY++IK  PY +  +  G P  +I  +D+G
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMG 37          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.668e-24
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  172 STSSPSAFTLVSW----EKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            S ++ +AF++V+     E+  +  +ALEAAR    KY++KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +E
Sbjct:   40 SAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKE 151          

HSP 2 Score: 40.0466 bits (92), Expect = 4.668e-24
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = 3
Query:   54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGM 158
            RPARCYR+IK  PY +  +  G P  +I  +D+G+
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGV 38          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.270e-23
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  172 STSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            S   P   TLV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+E
Sbjct:   39 SADFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKE 146          

HSP 2 Score: 37.3502 bits (85), Expect = 2.270e-23
Identity = 14/39 (35.90%), Postives = 28/39 (71.79%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK 161
            M R+PAR +R+++ +PY ++ +  G P  ++R++D+G K
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNK 38          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.508e-23
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  172 STSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSV 459
            S   P    LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V
Sbjct:   41 SAEFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTV 136          

HSP 2 Score: 38.891 bits (89), Expect = 6.508e-23
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 3
Query:   54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            RP RCYR +   PY +  + +GVP PK+  + +G
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMG 38          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.051e-22
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            P    LV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N  HA+E
Sbjct:   44 PVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKE 147          

HSP 2 Score: 41.5874 bits (96), Expect = 9.051e-22
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            M  RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VH
Sbjct:    1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVH 48          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.993e-21
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  166 KASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSN 477
            KA+T+ P   +LV+ EK  +   ALEAARI  N+++   AGK  F++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q L +V  +  N
Sbjct:   39 KANTTFPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQN 142          

HSP 2 Score: 32.3426 bits (72), Expect = 1.993e-21
Identity = 12/39 (30.77%), Postives = 23/39 (58.97%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK 161
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDK 39          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.995e-21
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            LV      + + ALEAAR   NKY+    G+  F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G  ARV  GQ+++ V+    N  HA+E
Sbjct:   49 LVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKE 147          

HSP 2 Score: 31.187 bits (69), Expect = 1.995e-21
Identity = 14/40 (35.00%), Postives = 19/40 (47.50%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 164
            M  RP RCYR     PY +  + +  P   I  +D+G  K
Sbjct:    1 MPLRPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK 40          
The following BLAST results are available for this feature:
BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_PYRCJ6.890e-2648.2150S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]
RL10_PYRAR7.382e-2545.8750S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_PYRAE9.611e-2548.2150S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_THENV4.668e-2445.8750S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_PYRIL4.668e-2444.6450S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_ARCFU2.270e-2344.4450S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_METJA6.508e-2346.8850S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_META39.051e-2243.2750S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_METMA1.993e-2147.1250S ribosomal protein L10e OS=Methanosarcina mazei... [more]
RL10_THEPD1.995e-2148.4850S ribosomal protein L10e OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bp
GAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGA
AGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAA
GTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATG
TCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGC
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