CF504563
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 6.890e-26 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 172 STSSPSAFT----LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 S ++ +AFT LV+ E+ + +ALEAAR +KY+ KY G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQV+ V K + H +E Sbjct: 40 SAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKE 151 HSP 2 Score: 40.4318 bits (93), Expect = 6.890e-26 Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3 Query: 45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155 M RPARCYR+IK PY + + G P +I +D+G Sbjct: 1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMG 37
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.382e-25 Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 169 ASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 A + P L+ E+ + +ALEAAR +KY+ KY G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQ+L K + H +E Sbjct: 43 ARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKE 151 HSP 2 Score: 39.6614 bits (91), Expect = 7.382e-25 Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155 RPARCYR+IK PY + + G P +I +D+G Sbjct: 4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMG 37
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.611e-25 Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1 Query: 172 STSSPSAFT----LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 S ++ +AFT LV E+ + +ALEAAR +KY+ KY G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQVL K + H +E Sbjct: 40 SAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKE 151 HSP 2 Score: 38.5058 bits (88), Expect = 9.611e-25 Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155 RPARCY++IK PY + + G P +I +D+G Sbjct: 4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMG 37
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.668e-24 Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 169 ASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 A + P LV E+ + +ALEAAR KY++KY G ++LR+ P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQV+ K + H +E Sbjct: 43 ARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKE 151 HSP 2 Score: 38.5058 bits (88), Expect = 4.668e-24 Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155 RPARCY++IK PY + + G P +I +D+G Sbjct: 4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMG 37
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.668e-24 Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1 Query: 172 STSSPSAFTLVSW----EKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 S ++ +AF++V+ E+ + +ALEAAR KY++KY G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQV+ + + H +E Sbjct: 40 SAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKE 151 HSP 2 Score: 40.0466 bits (92), Expect = 4.668e-24 Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = 3 Query: 54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGM 158 RPARCYR+IK PY + + G P +I +D+G+ Sbjct: 4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGV 38
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.270e-23 Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 172 STSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 S P TLV+ E + ALEAAR+ NKY+++ AG + L++R+ P H+LR +KM AGADR+ GMR AFGKP G ARV G ++SV K + A+E Sbjct: 39 SADFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKE 146 HSP 2 Score: 37.3502 bits (85), Expect = 2.270e-23 Identity = 14/39 (35.90%), Postives = 28/39 (71.79%), Query Frame = 3 Query: 45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK 161 M R+PAR +R+++ +PY ++ + G P ++R++D+G K Sbjct: 1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNK 38
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.508e-23 Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 Query: 172 STSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSV 459 S P LV+ + ALEAAR+A NKY+ K G+ + ++RV+P +LR +KM + AGADR+ GMR AFGKP GT ARV GQ +L+V Sbjct: 41 SAEFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTV 136 HSP 2 Score: 38.891 bits (89), Expect = 6.508e-23 Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 3 Query: 54 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155 RP RCYR + PY + + +GVP PK+ + +G Sbjct: 5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMG 38
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.051e-22 Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 P LV + + ALE+ARI NKY G+ + ++RV+P VLR NKM S AGADR+ GMR +FGK GT ARV GQ ++++ N HA+E Sbjct: 44 PVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKE 147 HSP 2 Score: 41.5874 bits (96), Expect = 9.051e-22 Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 3 Query: 45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197 M RP++CYR+I Y + ++ R VP PK+ Y G KG D FP VH Sbjct: 1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVH 48
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.993e-21 Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1 Query: 166 KASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSN 477 KA+T+ P +LV+ EK + ALEAARI N+++ AGK F++++RV+P VLR NK + AGADR+ +GMR AFGK GT ARV Q L +V + N Sbjct: 39 KANTTFPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQN 142 HSP 2 Score: 32.3426 bits (72), Expect = 1.993e-21 Identity = 12/39 (30.77%), Postives = 23/39 (58.97%), Query Frame = 3 Query: 45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK 161 M R+P YR ++ + + + ++ GVP ++ YD+G K Sbjct: 1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDK 39
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.995e-21 Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 199 LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495 LV + + ALEAAR NKY+ G+ F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G ARV GQ+++ V+ N HA+E Sbjct: 49 LVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKE 147 HSP 2 Score: 31.187 bits (69), Expect = 1.995e-21 Identity = 14/40 (35.00%), Postives = 19/40 (47.50%), Query Frame = 3 Query: 45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 164 M RP RCYR PY + + + P I +D+G K Sbjct: 1 MPLRPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK 40 The following BLAST results are available for this feature:
BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bpback to top |