CF504563

Overview
NameCF504563
Unique NameCF504563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.412e-18
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:  172 STSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSV 459
            S   P   +L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V
Sbjct:   40 SQEFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTV 135

HSP 2 Score: 33.113 bits (74), Expect = 2.412e-18
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFP 185
            M R+P + YR +  K Y + ++  GVP  KI  +++G   +   EFP
Sbjct:    1 MVRKPGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFP 44
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:  172 STSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            S   P + ++       ++  ALEAARIA N+YM + AG+  +HL++RV+P H++R N M + AGADR+Q GMR AFGKP  T A V   Q ++++     N   A+E
Sbjct:   28 SAEFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKE 135
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:  124 PIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSH 483
            P P+  + + G +++     P    L++ E   V   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++H
Sbjct:   27 PYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAH 143
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.970e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 1.970e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.970e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 1.970e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.970e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 1.970e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.970e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 1.970e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.970e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 1.970e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.970e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 1.970e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
[Close]
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.330e-17
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  199 LVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQE 495
            L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A+E
Sbjct:   49 LITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKE 149

HSP 2 Score: 35.039 bits (79), Expect = 3.330e-17
Identity = 14/37 (37.84%), Postives = 18/37 (48.65%), Query Frame = 3 
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  RP RCYR      Y +  +  G+P PKI  +  G
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSG 37
The following BLAST results are available for this feature:
BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_METPE2.412e-1845.8350S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_METTH7.707e-1841.6750S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_THEVO1.717e-1740.0050S ribosomal protein L10e OS=Thermoplasma volcani... [more]
RL10_SULIY1.970e-1741.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN1.970e-1741.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIM1.970e-1741.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL1.970e-1741.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK1.970e-1741.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA1.970e-1741.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULSO3.330e-1740.5950S ribosomal protein L10e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bp
GAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGA
AGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAA
GTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATG
TCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGC
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