CF504563

Overview
NameCF504563
Unique NameCF504563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:9..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  124 PIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            P P+  + + G ++K     P    LV+ E   +   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++   HA+E
Sbjct:   27 PYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEA---HAKE 144          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.326e-17
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSV 459
            P   +LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGADR+  GMR AFGK  GT AR    Q + +V
Sbjct:   44 PMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTV 135          

HSP 2 Score: 30.8018 bits (68), Expect = 7.326e-17
Identity = 12/37 (32.43%), Postives = 20/37 (54.05%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M R+P   YR +  K Y +  +  G+P  K+  +D+G
Sbjct:    1 MVRKPNSMYRNLAKKAYTRKEYMGGIPGVKVVHFDMG 37          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.237e-16
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCK 468
            P   +LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+
Sbjct:   47 PVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCE 141          

HSP 2 Score: 33.4982 bits (75), Expect = 1.237e-16
Identity = 14/47 (29.79%), Postives = 24/47 (51.06%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFP 185
            M  +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYP 47          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.237e-16
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCK 468
            P   +LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+
Sbjct:   47 PVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCE 141          

HSP 2 Score: 33.4982 bits (75), Expect = 1.237e-16
Identity = 14/47 (29.79%), Postives = 24/47 (51.06%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFP 185
            M  +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYP 47          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.608e-16
Identity = 37/104 (35.58%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            P   +L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++
Sbjct:   47 PVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKD 150          

HSP 2 Score: 33.113 bits (74), Expect = 1.608e-16
Identity = 13/47 (27.66%), Postives = 25/47 (53.19%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFP 185
            M  +PA  YR++    Y +  +  G+P  KI  +++G  + G  ++P
Sbjct:    1 MSDKPASMYRKLSKPSYTRRDYVTGIPGSKIAQHNMGNLQTGPQDYP 47          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.096e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLS--VRCKD 471
            P   TL   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK   + A V   Q +++  V+ KD
Sbjct:   32 PLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKD 129          

HSP 2 Score: 23.8682 bits (50), Expect = 2.096e-16
Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = 3
Query:   87 KPYPKSRFCRGVPDPKIRIYDVG 155
            +PY +  + R +P  KI  YD+G
Sbjct:    3 RPYTRKDYIRKIPASKIVQYDMG 25          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  127 IPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            IPR E  M   + K      S   L   E   +   ALEAAR    KY++K      F+L++  +P HV+R NKML+ AGADRLQ GMR AFG P G   ++  G+VL+ V  +D N  HA+E
Sbjct:   30 IPRFE--MGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKE 150          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  124 PIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS 480
            P P+  + + G ++K          LV+ E   +   ALEAAR++ N+ +   AG D + L++R +P  V+R +KM + AGADR+ +GMR AFG+P GT ARV  GQ+++  R   +N+
Sbjct:   27 PYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNA 142          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.801e-14
Identity = 33/94 (35.11%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  184 PSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRC 465
            P   +L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C
Sbjct:   47 PVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYC 140          

HSP 2 Score: 31.9574 bits (71), Expect = 1.801e-14
Identity = 14/47 (29.79%), Postives = 23/47 (48.94%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFP 185
            M  +PA  YR I    Y +  +  G+P  KI  +++G      D++P
Sbjct:    1 MSDKPASMYRTIDKPSYTRREYITGIPGSKIAQHNMGDLSAEPDDYP 47          
BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.670e-14
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  196 TLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++
Sbjct:   51 SLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKD 151          

HSP 2 Score: 30.0314 bits (66), Expect = 6.670e-14
Identity = 12/37 (32.43%), Postives = 18/37 (48.65%), Query Frame = 3
Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVG 155
            M  +PA  YR I    Y +  +  G+P  K+  Y +G
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMG 37          
The following BLAST results are available for this feature:
BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_THEAC4.995e-1741.1350S ribosomal protein L10e OS=Thermoplasma acidoph... [more]
RL10_METHJ7.326e-1744.5750S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_HALSA1.237e-1637.8950S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS31.237e-1637.8950S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALWD1.608e-1635.5850S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_METST2.096e-1643.8850S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_CALMQ2.479e-1642.2850S ribosomal protein L10e OS=Caldivirga maquiling... [more]
RL10_PICTO2.741e-1537.8250S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_HALLT1.801e-1435.1150S ribosomal protein L10e OS=Halorubrum lacusprof... [more]
RL10_NATPD6.670e-1435.6450S ribosomal protein L10e OS=Natronomonas pharaon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bp
GAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGA
AGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAA
GTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATG
TCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGC
back to top