CF504573

Overview
NameCF504573
Unique NameCF504573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.908e-26
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   10 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            ++EMRIL++GLD AGKTTIL +     I T  PT+GFN++T+E+   +  +WDVGGQ  +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L  A LLV  NK
Sbjct:   14 EREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNK 126          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.908e-26
Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   10 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +KE+RILM+GLD AGKTTIL K    +I T  PT+GFN++T+ YK     +WD+GGQ  +R  WR+Y++    +I+V+DS+D  R+ + + EL ++L E++   A  LVFANK
Sbjct:   14 EKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANK 126          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.410e-26
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANK
Sbjct:   19 QSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANK 135          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.410e-26
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANK
Sbjct:   19 QSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANK 135          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.410e-26
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANK
Sbjct:   19 QSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANK 135          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.410e-26
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANK
Sbjct:   19 QSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANK 135          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.410e-26
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +LVFANK
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANK 127          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.371e-26
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANK
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 127          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.093e-25
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANK
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANK 127          
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.155e-25
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   13 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +E+RIL++GLD AGKTTIL +L   ++    PT GFNV+TV    +I   VWD+GGQ  IRP W +Y++N   LIFV+DSND+ R  E   EL  +L+E++LR   +L+FANK
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANK 128          
The following BLAST results are available for this feature:
BLAST of CF504573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL2_DROME4.908e-2649.56ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL2_DICDI4.908e-2646.90ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL4A_RAT6.410e-2646.15ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE6.410e-2646.15ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN6.410e-2646.15ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN6.410e-2646.15ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL3_RAT6.410e-2650.89ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL3_MOUSE8.371e-2650.00ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_HUMAN1.093e-2549.11ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL3_CAEEL4.155e-2550.44ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-062 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504573 ID=CF504573; Name=CF504573; organism=Citrus sinensis; type=EST; length=350bp
CTTTTTGCTAAGAAAGAGATGAGAATTCTCATGGTAGGTCTCGATGCAGC
TGGTAAGACTACTATCCTGTACAAGCTTAAGCTCGGAGAGATCGTCACCA
CCATTCCTACCATTGGATTTAATGTAGAGACCGTTGAGTATAAGAACATC
AGCTTTACTGTCTGGGATGTCGGGGGTCAAGACAAGATCCGACCTTTGTG
GAGACATTATTTCCAAAACACCCAAGGACTCATCTTTGTGGTTGACAGTA
ATGATCGCGACCGTGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTG
AATGAGGATGAATTGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCA
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