CF504573

Overview
NameCF504573
Unique NameCF504573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:217..566. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.049e-52
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            LF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E    L +ML EDEL+DAVLL+FANK
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANK 127
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 5.757e-51
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+AV LVFANK
Sbjct:   12 LFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANK 127
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 1.283e-50
Identity = 93/116 (80.17%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A  LVFANK
Sbjct:   12 LFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANK 127
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.159e-49
Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.159e-49
Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.159e-49
Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.159e-49
Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 3.159e-49
Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 4.126e-49
Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANK 123
[Close]
BLAST of CF504573 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 9.191e-49
Identity = 89/116 (76.72%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 348
            +F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK
Sbjct:    8 IFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANK 123
The following BLAST results are available for this feature:
BLAST of CF504573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF4_MOUSE1.049e-5287.07ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF2_YEAST5.757e-5180.17ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF1_YEAST1.283e-5080.17ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF6_RAT3.159e-4976.72ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG3.159e-4976.72ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE3.159e-4976.72ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN3.159e-4976.72ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK3.159e-4976.72ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_DROME4.126e-4976.72ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_XENLA9.191e-4976.72ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-062 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504573 ID=CF504573; Name=CF504573; organism=Citrus sinensis; type=EST; length=350bp
CTTTTTGCTAAGAAAGAGATGAGAATTCTCATGGTAGGTCTCGATGCAGC
TGGTAAGACTACTATCCTGTACAAGCTTAAGCTCGGAGAGATCGTCACCA
CCATTCCTACCATTGGATTTAATGTAGAGACCGTTGAGTATAAGAACATC
AGCTTTACTGTCTGGGATGTCGGGGGTCAAGACAAGATCCGACCTTTGTG
GAGACATTATTTCCAAAACACCCAAGGACTCATCTTTGTGGTTGACAGTA
ATGATCGCGACCGTGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTG
AATGAGGATGAATTGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCA
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