CF504577

Overview
NameCF504577
Unique NameCF504577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_CANFA (Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.933e-23
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPD 600
            GGAY+K L       + Q F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PD
Sbjct:  162 GGAYVKLLSKTPELNLDQ-FHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 246          

HSP 2 Score: 42.743 bits (99), Expect = 2.933e-23
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +S+D      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+E
Sbjct:   74 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIE 160          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_ASPFU (Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_4G12850 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            GGAY+K L+  +    ++EF N +PY+IMFGPDKCGATNKVHFI +HKNPK+GEY E H+  PP+  + KLT +YT I+KPD
Sbjct:  142 GGAYMKLLQENKK-LHAEEFSNATPYVIMFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPD 222          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.245e-20
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVP-----SDKLTHVYTAILKPD 600
            GGAY+K L   +   + + F +++ Y+IMFGPDKCG   K+HFI +HK+PK+G + E H K PP V      +D+ TH+YT ++ PD
Sbjct:  152 GGAYIKLLADTD-DLILENFYDKTSYIIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAK-PPDVDLKKFFTDRKTHLYTLVMNPD 236          

HSP 2 Score: 39.2762 bits (90), Expect = 1.245e-20
Identity = 25/87 (28.74%), Postives = 46/87 (52.87%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVWKHSKSEGHE---DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            E++D      W++S+  KD+       Y G W+  + + ++   D GL++   AK +AI   L +P    D  +++QYEV  Q+G++
Sbjct:   64 ETFDSGRLAGWVLSKAKKDDMDEEISIYDGRWEIEELKENQVPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGID 150          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.106e-20
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVP-----SDKLTHVYTAILKPD 600
            GGAY+K L       + + F +++ Y IMFGPDKCG   K+H I +HK+PK+G + E H K PP V      +D+ TH+YT ++ PD
Sbjct:  152 GGAYIKLLA-DTGDLILENFYDKTSYTIMFGPDKCGEDYKLHLIFRHKHPKTGVFEEKHAK-PPDVDLKEFFTDRKTHLYTLVMNPD 236          

HSP 2 Score: 41.9726 bits (97), Expect = 2.106e-20
Identity = 25/87 (28.74%), Postives = 47/87 (54.02%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVWKHSKSEGHE---DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            E++D      W++S+  KD+       Y G W+  + + ++   D GL++   AK +AI   L++P    D  +++QYEV  Q+G++
Sbjct:   64 ETFDSGNLAGWVLSKAKKDDMDSEIAIYDGRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQYEVNFQDGID 150          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.107e-20
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVP-----SDKLTHVYTAILKPD 600
            GGAY+K L   + G   + F +++ Y IMFGPDKCG   K+HFI +HK+PK+G + E H K PP V      +D+ TH+YT ++ PD
Sbjct:  148 GGAYIKLLADTD-GLNLENFYDKTSYTIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAK-PPDVDLKRFFTDRKTHLYTLVMNPD 232          

HSP 2 Score: 38.891 bits (89), Expect = 2.107e-20
Identity = 23/69 (33.33%), Postives = 37/69 (53.62%), Query Frame = 3
Query:  144 FDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +DGRW + +        K ++  G  D GL++   AK +AI   L +P    D  +V+QYEV  Q+G++
Sbjct:   87 YDGRWEIEEL-------KENRIPG--DRGLVLKSRAKHHAISAVLAKPFIFADKPLVVQYEVNFQDGID 146          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.833e-18
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPS----DKLTHVYTAILKP 597
            GG YLK L  + A      F +++ Y IMFGPDKCGAT KVH I ++KNP +G   E+H   P ++ S    D  TH++T ++KP
Sbjct:  153 GGGYLKLLS-EGAEKDLANFQDKTAYTIMFGPDKCGATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKP 236          

HSP 2 Score: 37.3502 bits (85), Expect = 1.833e-18
Identity = 19/61 (31.15%), Postives = 32/61 (52.46%), Query Frame = 3
Query:  177 EYKGVWK---HSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +Y G W     +K     D GL+V   A+ +AI  +L+ P +    T V+QY+++ + G E
Sbjct:   91 KYNGEWSIGAPTKVSIEGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQE 151          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.199e-15
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  346 LNGGGAYLKYLRPQEAGWVSQE-FDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            L+ GG Y+K L    +G V Q+ F  ++PY IMFGPD CG +T KVH IL + +        H +K      +D+LTHVYT IL+PD
Sbjct:  111 LDCGGGYMKLL----SGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYND------TNHLIKKEVPCETDQLTHVYTFILRPD 187          

HSP 2 Score: 37.7354 bits (86), Expect = 2.199e-15
Identity = 26/93 (27.96%), Postives = 45/93 (48.39%), Query Frame = 3
Query:   90 LISASDDATILYESYDESFDGRWIVSQ--KDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            L++         ES+++ ++ RW+ S+  KDE   G W H+  + +    D G+   E  + YAI  E  E  S K   +V Q+ V+ +  L+
Sbjct:   21 LVAVVSAEVFFEESFNDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDANDKGIQTSEDYRFYAISAEFPE-FSNKGKNLVFQFSVKHEQKLD 112          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.324e-14
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            GG YLK L   +A     +F  ++PY IMFGPD CGAT K+HFIL +K            K  P   +D L+H YTA++K D
Sbjct:  104 GGGYLKLLPSVDAA----KFTGDTPYHIMFGPDICGATKKIHFILTYKGKNL------LWKKEPRCETDTLSHTYTAVIKAD 175          

HSP 2 Score: 30.8018 bits (68), Expect = 2.324e-14
Identity = 21/85 (24.71%), Postives = 42/85 (49.41%), Query Frame = 3
Query:  111 ATILY-ESYDESFDGRWIVSQKDEYKGVWKHSKSEGH----EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +TI Y E+++  ++ RW  S      G +K +  + +    +D G+   + AK YAI   +    S +   +VLQ+ V+ +  ++
Sbjct:   18 STIYYKETFEPDWETRWTHSTAKSDYGKFKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDLVLQFSVKHEQDID 102          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 9.055e-13
Identity = 35/83 (42.17%), Postives = 43/83 (51.81%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            GGAY+K L         ++F  ESPY IMFGPD CG AT KVH I  +K         H +K       D  TH+YT I+ P+
Sbjct:  104 GGAYIKLLGSDID---PKKFHGESPYKIMFGPDICGMATKKVHVIFNYKGK------NHLIKKEIPCKDDLKTHLYTLIVNPN 177          

HSP 2 Score: 35.4242 bits (80), Expect = 9.055e-13
Identity = 20/69 (28.99%), Postives = 35/69 (50.72%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVR 332
            ES +      +   ++ E+K     S  +  ED GL   + A+ Y I +++ EP S +  T+VLQ+ V+
Sbjct:   28 ESIENWVQSTYNAEKQGEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTMVLQFTVK 96          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 1.603e-11
Identity = 30/83 (36.14%), Postives = 40/83 (48.19%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            GG Y+K +         ++   E+PY IMFGPD CG  T KVH I  +K+        H +K       D  TH+YT I+  D
Sbjct:  104 GGGYVKLMASDVN---LEDSHGETPYHIMFGPDICGPGTKKVHVIFHYKDR------NHMIKKDIRCKDDVFTHLYTLIVNSD 177          

HSP 2 Score: 39.2762 bits (90), Expect = 1.603e-11
Identity = 23/76 (30.26%), Postives = 42/76 (55.26%), Query Frame = 3
Query:  135 DESFDGRWIVSQKDEYKGVWK--HSKSEGH--EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            D+ ++ RWI S+  +  G W+  H K  G   +D GL   + AK Y+I  + D+  S K  ++V+Q+ V+ +  ++
Sbjct:   27 DDDWEKRWIKSKHKDDFGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSLVIQFSVKHEQDID 102          
The following BLAST results are available for this feature:
BLAST of CF504577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CALX_CANFA2.933e-2351.16Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3[more]
CALX_ASPFU5.508e-2359.76Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_... [more]
CLGN_HUMAN1.245e-2044.83Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CLGN_MOUSE2.106e-2043.68Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_BOVIN2.107e-2045.98Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX_CAEEL1.833e-1844.71Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR_NICPL2.199e-1544.83Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_EUGGR2.324e-1443.90Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_SCHMA9.055e-1342.17Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_ONCVO1.603e-1136.14Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-066 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504577 ID=CF504577; Name=CF504577; organism=Citrus sinensis; type=EST; length=601bp
GGACTCTCTCTCTCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGG
TTCGCTCTCCTGCTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGC
TTCTGATGATGCCACGATCTTGTACGAGTCGTATGACGAGTCGTTCGACG
GACGATGGATCGTTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCAT
TCAAAGAGTGAGGGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGC
AAAGAAGTACGCGATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGG
ATGGAACTGTTGTCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAA
TGGTGGTGGTGCATATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGG
TATCCCAGGAGTTCGACAATGAATCTCCGTATATGATTATGTTTGGACCT
GATAAATGTGGTGCAACAAACAAGGTGCACTTCATCTTAAAGCATAAGAA
TCCCAAGAGTGGAGAGTACATTGAACACCATCTCAAGAACCCACCTTCTG
TGCCCTCTGATAAACTGACTCATGTATACACTGCCATCTTGAAACCTGAT
A
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