CF504579

Overview
NameCF504579
Unique NameCF504579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: UBA4_PICST (Adenylyltransferase and sulfurtransferase UBA4 OS=Pichia stipitis GN=UBA4 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.548e-22
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  101 PPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            P V +  +   L   NA +I++ Y+IV+D TD    RY+I+D  V+  K +VSG+ L  +GQL++ N+N  GPCYRC +P PP   +   C+D GV+G   G++G   A+  +
Sbjct:  141 PHVIVKTYPVRLHNDNAFDIVNDYDIVLDCTDTPAIRYLINDVSVLCRKTIVSGSGLKSDGQLSILNFNNEGPCYRCFYPKPPSAESITTCSDGGVIGPCIGLLGVSMAVETI 253          

HSP 2 Score: 31.187 bits (69), Expect = 1.548e-22
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:    1 VELNNMHRQVIHTEPYIGQSKVKSA 75
            V+++N+HRQV+HT   IG  K  SA
Sbjct:  108 VDISNLHRQVLHTTDSIGMFKCDSA 132          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: UBA4_ASHGO (Adenylyltransferase and sulfurtransferase UBA4 OS=Ashbya gossypii GN=UBA4 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.647e-22
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   92 RSTPPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            R  P   I  +   L  +NA EI   +++++D TD+  SRY+ISD  V LGK +VSG+ LG EGQL++YN+ N GPCYRC +P PP   +   C   GVLG   G++G + A+  L
Sbjct:  136 RLNPYCSIKTYPVRLSYANAFEIFPSWDLILDCTDSPMSRYLISDVAVNLGKTVVSGSGLGTEGQLSIYNFENKGPCYRCFYPIPPRPGSVVSCQSGGVLGPCIGVLGIMMAVEAL 251          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: MOEB_PORPU (Probable molybdopterin biosynthesis protein moeB OS=Porphyra purpurea GN=moeB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.156e-21
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  134 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT-PPPTTACQRCADSGVLGVVPGIIGCLQA 424
            L++ NA+EI+ QY+I++D TDN  SRY+ISD C+ L K  + GA    EGQ++ +NY GGP YR               C+++GVLG++PGIIG LQA
Sbjct:  117 LQSINAIEIIRQYDIIIDGTDNFGSRYIISDSCLELNKIHIYGAIFQFEGQVSTFNYQGGPKYRDFHNNIETENNPEDTCSNAGVLGLLPGIIGTLQA 214          

HSP 2 Score: 30.0314 bits (66), Expect = 2.156e-21
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 1
Query:    1 VELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTCS 111
            ++++N+ RQ+++T   IG SK   A      IN TC+
Sbjct:   73 IDISNLQRQILYTVNDIGLSKAYIAKKKILEINPTCN 109          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: MOEB_PORYE (Probable molybdopterin biosynthesis protein moeB OS=Porphyra yezoensis GN=moeB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.650e-21
Identity = 44/109 (40.37%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  101 PPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLF-PTPPPTTACQRCADSGVLGVVPGIIGCLQA 424
            P   +   +  L   N+++I+ QY+I++D +DN  +RY+++D C+ L K  + GA    EGQ++V+NY GGP YR  +  T    +A   C++SGVLG++PGI+G LQA
Sbjct:  106 PQCIVTVFKTRLSYENSIDIIRQYDIIIDGSDNFDTRYLLNDTCLELNKIHIYGAIFQFEGQVSVFNYQGGPVYRDFYSETENKESARDTCSNSGVLGLLPGIVGTLQA 214          

HSP 2 Score: 27.335 bits (59), Expect = 3.650e-21
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = 1
Query:    1 VELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTC 108
            ++L+N+ RQ+++    IG SKV+ A      +N  C
Sbjct:   73 IDLSNLQRQILYRCNDIGYSKVEIAKKKILDLNPQC 108          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: MOEB_GRATL (Probable molybdopterin biosynthesis protein moeB OS=Gracilaria tenuistipitata var. liui GN=moeB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.737e-16
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  146 NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            N   I+  Y+IV+D TDN  SRY+IS  C +  K  + GA  G EG ++V+NY  GP Y  L+P        + C   GVLGV  GIIG  QA+  +
Sbjct:  120 NCEYIIKNYDIVIDTTDNFQSRYIISKSCYLQHKVHIYGAVRGFEGHISVFNYRSGPIYSDLYP-QSLNLDVKECNMFGVLGVTTGIIGIFQAVEAM 215          

HSP 2 Score: 28.1054 bits (61), Expect = 1.737e-16
Identity = 11/37 (29.73%), Postives = 21/37 (56.76%), Query Frame = 1
Query:    1 VELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTCS 111
            V+ +N+HRQ+++    +G+ KV       + IN  C+
Sbjct:   72 VDYSNLHRQILYNNKDVGKLKVGIVYDRIKMINPECN 108          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: MOEB_ECOLI (Molybdopterin biosynthesis protein moeB OS=Escherichia coli (strain K12) GN=moeB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 2
Query:   92 RSTPPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            R  P + I      L  +    +++++++V+D TDN   R  ++  C     PLVSGAA+ +EGQ+TV+ Y +G PCYRCL            C ++GV+  + G+IG LQA+  +
Sbjct:   96 RINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENAL--TCVEAGVMAPLIGVIGSLQAMEAI 209          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: THIF_ECOLI (Adenylyltransferase thiF OS=Escherichia coli (strain K12) GN=thiF PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  101 PPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            P + +   ++ L      + +++ ++V+D TDN  +R  I+  CV L  PL++ +A+G  GQL V    +  G CYRCL+P        + C  +GV+G V G++G LQAL  +
Sbjct:   96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--RNCRTAGVVGPVVGVMGTLQALEAI 206          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: MOEB_SALTY (Molybdopterin biosynthesis protein moeB OS=Salmonella typhimurium GN=moeB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 38/116 (32.76%), Postives = 59/116 (50.86%), Query Frame = 2
Query:   92 RSTPPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            R  P + I      L       +++ + +V+D TDN   R  ++  C     PL+SGAA+ +EGQ+TV+ Y    PCYRCL            C ++GV+  + G+IG LQA+  +
Sbjct:   96 RINPHITITPVNARLDDDAMTSLIAGHSLVLDCTDNVSVRNQLNAGCYTAKVPLISGAAIRMEGQVTVFTYRENEPCYRCLSRLFGENAL--TCVEAGVMAPLIGVIGSLQAMEAI 209          
BLAST of CF504579 vs. ExPASy Swiss-Prot
Match: MOEB_HAEIN (Molybdopterin biosynthesis protein moeB OS=Haemophilus influenzae GN=moeB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  101 PPVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN-GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALRPL 436
            P ++I      L      EI+  ++IV+D TDN   R  +   C  +  PL+SGAA+ +EGQ++V+ Y    P YR L            C ++GVL  + GI+GC+QAL  +
Sbjct:   99 PHINIETINAKLDEEKLAEIIPHFDIVLDCTDNVEIRNQLDRQCNHMKVPLISGAAIRMEGQVSVFTYEPNTPTYRDLSKLFRQNVL--SCVEAGVLAPIVGIVGCIQALEAI 209          
The following BLAST results are available for this feature:
BLAST of CF504579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
UBA4_PICST1.548e-2238.94Adenylyltransferase and sulfurtransferase UBA4 OS=... [more]
UBA4_ASHGO4.647e-2243.97Adenylyltransferase and sulfurtransferase UBA4 OS=... [more]
MOEB_PORPU2.156e-2146.94Probable molybdopterin biosynthesis protein moeB O... [more]
MOEB_PORYE3.650e-2140.37Probable molybdopterin biosynthesis protein moeB O... [more]
MOEB_GRATL1.737e-1642.27Probable molybdopterin biosynthesis protein moeB O... [more]
MOEB_ECOLI3.019e-1334.48Molybdopterin biosynthesis protein moeB OS=Escheri... [more]
THIF_ECOLI2.826e-1133.33Adenylyltransferase thiF OS=Escherichia coli (stra... [more]
MOEB_SALTY2.826e-1132.76Molybdopterin biosynthesis protein moeB OS=Salmone... [more]
MOEB_HAEIN3.690e-1134.51Molybdopterin biosynthesis protein moeB OS=Haemoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-068 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504579 ID=CF504579; Name=CF504579; organism=Citrus sinensis; type=EST; length=436bp
GTTGAGCTTAACAACATGCACAGGCAGGTTATCCACACCGAACCATATAT
TGGTCAATCAAAAGTGAAATCTGCTGCTGCTACTTGTCGTTCGATCAACT
CCACCTGTTCACATTATTGAGCACAGAGAAGCTTTACGCACATCCAATGC
TTTGGAAATACTGAGTCAATATGAGATAGTTGTAGATGCAACCGATAATG
CTCCAAGCCGTTACATGATCAGTGATTGTTGTGTGGTGTTGGGAAAGCCT
CTGGTATCAGGTGCTGCACTGGGACTGGAAGGGCAGCTCACAGTTTACAA
TTACAATGGAGGTCCTTGCTATCGTTGCCTATTTCCAACCCCACCACCAA
CTACAGCATGCCAAAGATGCGCTGATAGTGGAGTCCTTGGAGTAGTTCCT
GGAATCATTGGCTGTCTCCAAGCCTTAAGGCCATTA
back to top