CF504581

Overview
NameCF504581
Unique NameCF504581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13532 contig Csv1_Contig13532:86..451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   50 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            EFI  VN +  ++H N+ +L+G+ A    DQR+L+YE   +G+L   ++   +    + WNTRV +AL AA+ L +LHE      ++  F +AN+ +D D S  +S
Sbjct:  527 EFIELVNNIDMIRHSNIVELVGYCAEH--DQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVS 630          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   38 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            QG ++F  +++ L  ++HPNL  L+G+HA +   +  LIY  L  G+L   I  RS    I+W    KIAL  A+ L++LHE+   + ++ +   +NI +D +++A LS
Sbjct:  297 QGDQQFHAEISALEMVRHPNLVMLIGYHASE--TEMFLIYNYLSGGNLQDFIKERSKAA-IEWKVLHKIALDVARALSYLHEQCSPKVLHRDIKPSNILLDNNYNAYLS 402          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: CRK21_ARATH (Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 EATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            E    RL+ PS QG  EF N+V  +A LQH NL  LLGF      ++++L+YE + + SLD  ++       +DW  R  I     +G+ +LH++     ++ +   +NI +D + + K++
Sbjct:  387 EVAAKRLSKPSDQGEPEFKNEVLLVARLQHKNLVGLLGFSVE--GEEKILVYEFVPNKSLDHFLFDPIKRVQLDWPRRHNIIEGITRGILYLHQDSRLTIIHRDLKASNILLDAEMNPKIA 505          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 36/116 (31.03%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   32 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP-----IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            S QG+ EF  ++  L+ L+H +L  L+GF   D + + +L+YE + +G L   +YG  +  P     + W  R++I + +A+GL +LH       ++ +  T NI +D++  AK+S
Sbjct:  559 SEQGINEFQTEIQMLSKLRHRHLVSLIGFC--DENKEMILVYEYMSNGPLRDHLYGSKENDPNPIPTLSWKQRLEICIGSARGLHYLHTGAAQGIIHRDVKTTNILLDENLVAKVS 672          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 38/117 (32.48%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   32 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            S +   +F + ++ ++ L+H +  +LLG+     ++ R+LIY+    GSL  +++GR        GP ++WN RVKIA  AA+GL FLHE+     ++ +  ++N+ +  DF AK++
Sbjct:  107 SEEPDSDFTSQLSVVSRLKHDHFVELLGYCLE--ANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDFVAKMA 221          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   14 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            V RL+    G K+F +++N L  L+HPNL  LLG+   +  D+R+L+Y+ + +G+L  +L  G      +DW TR  I + AA+GL +LH       ++   S+  I +D DF A+++
Sbjct:  328 VKRLSACGFGEKQFRSEMNKLGELRHPNLVPLLGYCVVE--DERLLVYKHMVNGTLFSQLHNGGLCDAVLDWPTRRAIGVGAAKGLAWLHHGCQPPYLHQFISSNVILLDDDFDARIT 443          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 2
Query:   47 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 361
            K+F  ++  L+ ++HP+L  LLG     G     L+YE + +GSLD  +   +D PPI W  R +IAL  A  L FLH+  P   ++ +    NI +D +F +KL
Sbjct:  528 KQFDQELEILSKIRHPHLVLLLGACPERGC----LVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKL 628          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   32 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            SSQG K F  +V  L  + H NL  L+G+   D  +   LIYE + +G L + + G+  G  + W +R+KI L AA GL +LH       ++ +  T NI +D+   AKL+
Sbjct:  611 SSQGYKHFKAEVELLMRVHHINLVSLVGYC--DEGEHLALIYEYMPNGDLKQHLSGKHGGFVLSWESRLKIVLDAALGLEYLHTGCVPPMVHRDIKTTNILLDQHLQAKLA 719          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 2
Query:    5 EATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP-PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            +A V RL+    Q  +EF  +V  L+  +H NL  L G+  + G+D R+LIY  + +GSLD  ++ R DG   + W+ R+KIA  AA+GL +LH+      ++ +  ++NI +D+ F A L+
Sbjct:  778 KAAVKRLSGDCGQMEREFQAEVEALSRAEHKNLVSLQGY-CKHGND-RLLIYSFMENGSLDYWLHERVDGNMTLIWDVRLKIAQGAARGLAYLHKVCEPNVIHRDVKSSNILLDEKFEAHLA 897          
BLAST of CF504581 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 35/104 (33.65%), Postives = 63/104 (60.58%), Query Frame = 2
Query:   53 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 364
            F  ++ TL  ++H ++ +LLG+ A    D  +L+YE + +GSL  L++G S G  + W TR ++A+ AA+GL +LH +     ++ +  + NI +D DF A ++
Sbjct:  734 FTAEIQTLGRIRHRHIVRLLGYVAN--KDTNLLLYEYMPNGSLGELLHG-SKGGHLQWETRHRVAVEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVA 834          
The following BLAST results are available for this feature:
BLAST of CF504581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SRF3_ARATH1.504e-1135.85Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
RPK1_ARATH1.504e-1134.86Probable LRR receptor-like serine/threonine-protei... [more]
CRK21_ARATH1.504e-1131.40Cysteine-rich receptor-like protein kinase 21 OS=A... [more]
Y5613_ARATH1.965e-1131.03Probable receptor-like protein kinase At5g61350 OS... [more]
Y2197_ARATH1.965e-1132.48Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
Y1719_ARATH1.965e-1134.75Probable inactive receptor kinase At1g27190 OS=Ara... [more]
PUB52_ARATH1.965e-1136.19U-box domain-containing protein 52 OS=Arabidopsis ... [more]
Y2899_ARATH2.566e-1136.04Probable leucine-rich repeat receptor-like protein... [more]
PSKR2_ARATH2.566e-1136.07Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
CLV1_ARATH2.566e-1133.65Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-070 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504581 ID=CF504581; Name=CF504581; organism=Citrus sinensis; type=EST; length=366bp
GTTTGAAGCCACTGTTACTCGCCTTAATCCATCCAGCCAGGGTGTGAAGG
AATTTATAAATGATGTAAACACCCTTGCATCATTGCAACATCCAAATCTC
TGTAAATTGCTTGGTTTTCATGCACGTGATGGATCGGACCAGAGAATGTT
GATCTATGAGAGACTTTTTCATGGAAGCTTGGACCGTCTTATTTATGGGA
GATCAGATGGGCCTCCAATTGATTGGAACACCAGGGTAAAAATTGCATTA
TGTGCTGCACAAGGTCTTACCTTCTTGCATGAAGAAGGGCCTTTTCAGGC
AATGTACAATGAATTTTCAACTGCCAACATACAAATTGACAAAGATTTTA
GTGCGAAGCTTTCAGG
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